BAC Information

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BAC

Clone NameMSMg01-534K18
Chromosome3 (Build37)
Map Location 91,577,044 - 91,577,279
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
Downstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534K18.T7 (MSMg01no534_k18.b1)MSMg01-534K18.TJ (MSMg01no534_k18.g1)
ACCAG602302AG602303
length750746
length of high quality
(start - end)
683 (39 - 721)635 (67 - 701)
definitionCHROMAT_FILE: MSMg01no534_k18.b1 PHD_FILE: MSMg01no534_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:16 2005CHROMAT_FILE: MSMg01no534_k18.g1 PHD_FILE: MSMg01no534_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TTTTTTCCTCTGTTTCTCATTAGAATCTCCAGCATGAATGTACAGTTAGA
CTGAAATAGGTTTACATATCCTGTCATTTTTGCTCTGCTCCTTAACATCC
TTTAGGGAGACAACCTGCCTGATACATTTCTTCATCCATTCCATAACCAA
CAGAGTCTTTCTGAGCCTTCATCAGAGCTGAAGCAAACAGTTTGACCACA
AACACAATCCATCTTGTCCATGCTGCCTTTTCTTATTTAATCATGTCTCA
GCATCACACATCTGGGATTTTCTTTTTTTTTCACTTGCTTTTATGTATTT
ATTCACAATACATGCTGTACACACCCTCAACCCTCCACTACTTCAAGCAA
CTGCATACCCTCTGCACCCAATATTTCCCTTTCTGGGAGAGAGGAGAGGT
GAACCCATGGGCATCAGCCCACCTTGGCACATAAAGTCACACTGGGAGTA
GAACCATTCTCTCCTTCTAAGGATACACAAGGCAGTACTGATAGGGGAAA
CAGATCCAAAGGCCAGCAGCAGATTCAAAGACAACTCCAACTGCAGTAAT
CTAAAGTAGTATCCTATAATTTTTAAATTTGATTGTGTTTATATAGAAGA
GTATCTTGATTGATTTTCATATATTGACCCTTTACTGCATAGCTGGTATG
AAGCCATCTTTATCTTGGTGGATGATGACTTTGATGTGCTTCTGGATTTG

GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTCTCACCCAGTACAACTGTCGTTCCCAGAGAA
TAATTTCTGAAGATCTTGTAGAGATTCATTATGTAACGCTCACTTGAGGT
CAAACCTTGGTCCATCTTATACTGTTGGAAGAAGGGAAACATAAACCTGA
AAGGAGAAGAGTGACTTTTTCACCTTACCTTGACCTGTTCTCTGGAAAGG
AACAAATTGGTACATAAGGAGAACATGACATAAAAAGGAATCCTTGGATC
CTGGGGAGACAGCTTGTTACTCACATATAAAATATTAGAATTTGACCTTC
AAAAAAAATTACAGCATTTTGTAACTCTGAAAATCACTAAAGAAAACAAC
AAACCAGTCAAGGACAGCAGGACAGGCTTCCAGGTGGATGGATTGAAACA
ATCCTGGATTAGATAATATATAAATAACTCTAACCCAGGCAGCAGCATCC
TACCAGGGGAATCTAGAGATTACTTACCAAAGCAGAAGAGCCACCCAGAG
TGTGCACAAGAGGAGGTGCACAGAATTATTTATAGGTAGGACTGACCTGT
AAATATGACTCTCCCAGGGAAACACTGAGTCACAAATTAATAGTGTGGTG
ACCCTGCCAAGGCTAGACTTGGGAGACAACCAATGCCTCTCCCTCTCTCC
TTCNNNCTTTTNCTTTTTCCCCTNCCCCCTNCCNNNTCCCCNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_k18.b1 MSMg01no534_k18.b1 CHROMAT_FILE:
MSMg01no534_k18.b1 PHD_FILE: MSMg01no534_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:16 2005
         (683 letters)



>mm_chr3_91576840_91577922
          Length = 1083

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttttttcctctgtttctcattagaatctccagcatgaatgtacagttagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaattcttttttttcctctgtttctcattagaatctccagcatgaatgtacagttagact 381

                                                                       
Query: 65  gaaataggtttacatatcctgtcatttttgctctgctccttaacatcctttagggagaca 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 gaaataggtttacatatcctgtcatttttgctccgctccttaacatcctttagggagaca 321

                                                                       
Query: 125 acctgcctgatacatttcttcatccattccataaccaacagagtctttctgagccttcat 184
           ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 320 acctgcctgatacatttcttcatccattccataaccatcagagtctttttgagccttcat 261

                                                                   
Query: 185 cagagctgaagcaaacagtttgaccacaaacacaatccatcttgtccatgctgcct 240
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 260 cagagctgaagcaaacagtttgaccccaagcacaatccatcttgtccatgctgcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)