Query= MSMg01no534_k24.b1 MSMg01no534_k24.b1 CHROMAT_FILE:
MSMg01no534_k24.b1 PHD_FILE: MSMg01no534_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:17 2005
(604 letters)
>mm_chr3_55886806_55887809
Length = 1004
Score = 538 bits (278), Expect = e-157
Identities = 308/326 (94%), Gaps = 15/326 (4%)
Strand = Plus / Minus
Query: 285 atttagatcagtgtttttttggttttttgagacagggtttctctatatagccctggctgt 344
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1004 atttagatcagtg-ttttttggttttttgagacagggtttctctgtatagccctggctgt 946
Query: 345 cctggaacttactttgtagaccaggctggcctgcctctg------cctcctgagtgctgg 398
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 945 cctggaactcactttgtagaccaggctggcctgcctctgcctctacctcctgagtgctgg 886
Query: 399 gattaaaggcgtgcaccaccacgcccagcttagatcagtggttcttaacctgtagtcaca 458
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gattaaaggcgtgcaccaccaagcccagcttagatcagtggttcttaacctgtagtcaca 826
Query: 459 taaaagcaagaagtttaatctgtgtgttctcattttatttattctttcctatttgcttat 518
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 825 taaaagcaagaagtttaatct--------tcattttatttattctttcctatttgcttat 774
Query: 519 gaaaatgcattcctgtgttttttgcattttaaatatagtaattgcagagagtcttgtaag 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaaaatgcattcctgtgttttttgcattttaaatatagtaattgcagagagtcttgtaag 714
Query: 579 agtgaggctcagggaatgaaacagat 604
||||||||||||||||||||||||||
Sbjct: 713 agtgaggctcagggaatgaaacagat 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_k24.g1 MSMg01no534_k24.g1 CHROMAT_FILE:
MSMg01no534_k24.g1 PHD_FILE: MSMg01no534_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:17 2005
(595 letters)
>mm_chr3_55701899_55702892
Length = 994
Score = 1096 bits (567), Expect = 0.0
Identities = 588/595 (98%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 1 ttttagcagtgacatataaaaatgaacaatttatagttgtatttttaaactacttatatt 60
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ttttagcagtaacatataaaaatgaacaatttatagttgtaattttaaactacttatatt 260
Query: 61 ctagttctcatcaattttaaaactcaaataaatataagtcctgaaatttaagaaagttta 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagctctcatcaattttaaaactcaaataaatataagtcctgaaatttaagaaagttta 320
Query: 121 aatatgctctaacagtcatataaactctttatatttgtattaaaaatgcaggttcttttt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatgctctaacagtcacataaactctttatatttgtattaaaaatgcaggttcttttt 380
Query: 181 ctttcaagtacttagcactaataagccatgataaatataaatgccaggtatcacattctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaagtacttagcactaataagccatgataaatataaatgccaggtatcacattctt 440
Query: 241 ttcatcagaaagctttcataaacttacagataaaaggctaagacaatttccaaaaggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatcagaaagctttcataaacttacagataaaaggctaagacaatttccaaaaggaaa 500
Query: 301 ctacttgataattattgtgatgaaagcacaaagggaaatgctttcaagtggaggcagctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacttgataattattgtgatgaaagcacaaagggaaatgctttcaagtggaggcagctc 560
Query: 361 aagtggaggctggtcagggctattctcaagagtctcatccttgcccgacaattacagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtggaggctggtcagggctattctcaagagtctcatccttgcccgacaattacagact 620
Query: 421 tgaattatggaagcaatctgagaaaataagtccttcaacagctgcgtgctcaagaattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaattatggaagcaatctgagaaaataagtccttcaacagctgcgtgctcaagaattct 680
Query: 481 aagttcttagactggtcctaggttgagtttctgtcataagtgtaacatttatagcaaaac 540
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 681 aagttcttagactcgtcctaggttgagcttctgtcataagtgtaacatttatagcaaa-c 739
Query: 541 actaaaggtgagcaatgagtcatctgtttttatttaatattagcaatgaaatgtg 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actaaaggtgagcaatgagtcatctgtttttatttaatattagcaatgaaatgtg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
