BAC Information

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BAC

Clone NameMSMg01-534N06
Chromosome3 (Build37)
Map Location 41,223,614 - 41,382,533
singlet/doubletdoublet
Overlap genePpia-ps3_337.1, LOC100039115
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004
Downstream genePhf17, Sclt1, D3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534N06.T7 (MSMg01no534_n06.b1)MSMg01-534N06.TJ (MSMg01no534_n06.g1)
ACCAG602422AG602423
length760745
length of high quality
(start - end)		559 (43 - 601)614 (72 - 685)
definitionCHROMAT_FILE: MSMg01no534_n06.b1 PHD_FILE: MSMg01no534_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:28 2005CHROMAT_FILE: MSMg01no534_n06.g1 PHD_FILE: MSMg01no534_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,381,978 - 41,382,533)(41,223,614 - 41,224,227)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAAAGAGTAACAGTGTGATGCAGCCCCGCCTGAACGGAGTGCACCAC
CTCCCGAGCAGGTGAGCTGAGAACGGTGAGAGAGTCCAGGGAGACCCAGA
GAACTTGCCTGCTAAACAAAGTGCGGAAGTTCCTCCATCCTCACTCACCA
GTCAACCTACATTTTCCTAAACTAAGTGGCGAGAACTTGGAGTCACTGAC
CATCAAAACGCCCTCATCCCAGATTTCAGAGAACAACCTCAAGCTAGACT
GATATTCCAAAATTCAAGCAACAGCGAGAATAAAATTAGTATTTTCCTTC
TGATGAGTCTACTGGTATTCACCCTGAAGACCCTGCGTAATGGAGCTAAG
AACAGTGTGCTCTGCCTGTGGTGGGGTTAATGTTCAGCAAAATTCCCTCC
TCTGTGACTCTAATGTACTTAAACCTTGACATCAGGCTGATTTATCTCAC
CCAGGGCTACTTACTGTATCAGAAAATCAAAGCCTGCGTTACTATCTTTA
ACACACACAATAGAGGCTGTATGTTGCAAGCCGCTGTCCACTAAAAGGCA
GCAGGAGGAGAGCCTCTGCGACACTATCCTGCTGTCTGGAGCACTGGCTG
GNTGCTACCTACGAGATGGTANGGAGCAAAGTGATNAATCATTAAAAGGA
CTCCTCACAAAACTCCAGAGAAAGCAGTAAGATGCCCACCCTGCATGAGG
CGGCAACACC

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGAAGCTCTCAGGCGACTTAGCCTAGC
TTATCCAAAGAGAAACCCTGTCTTACACAAGGAGGAAGGGGACATTGTCC
TTTGAACTCCGAATGTGTGCCATGACAGGACACGTGTGTGCCTGCATGTG
TATACACATAAATAGCCAGGCCCACAGCATATGCAAGGATGAGTTTCAAG
GAAAGATGATAGAACCGTGAATAAAACTCTGCATGCTGCTTCATGAGAGG
AGTGGGAGGGAAGGGGGAGTCACTTTTCTACAGAACGATGACAGCTAATA
AAGTAGACAGCAGACCCATTCCCATAATAGTTTCACCACACCCGCAGCAA
CAACGGGTCAGCTGAGGGCCAGGACATGCTAATACTGTTGGTGAACGATG
GTTGGAAAAACAGGTCATTCACAAGTCTTAGATTTTCAAATAGCAAAGGA
ATGGGGTGTAACTTGTGGATAGAATGTCTCCCAAGTATATATGAGGCTCT
GGGCTTAATCGCCAGCACTGGCAACAAATAAACAAACTCATTAATCAATT
TAAAAATCAGCTATCAGATCAACATCCACTTATCAAGAGGAAACTATGCT
TTTGTAAGAGGCGAACATCTTAACTCGGGTAATATTGGATGTAAATATCA
CCAATGAGACAGAGGGACATAATTAGTGCCCCTGTTATGATGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_n06.b1 MSMg01no534_n06.b1 CHROMAT_FILE:
MSMg01no534_n06.b1 PHD_FILE: MSMg01no534_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:28 2005
         (559 letters)



>mm_chr3_41381775_41382733
          Length = 959

 Score = 1013 bits (524), Expect = 0.0
 Identities = 548/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaaagagtaacagtgtgatgcagccccgcctgaacggagtgcaccacctccc 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 759 ggaatgcctaaagagtaacagtgtgatgcagccccgcctgaacggagtgcaccacctccg 700

                                                                       
Query: 64  gagcaggtgagctgagaacggtgagagagtccagggagacccagagaacttgcctgctaa 123
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gagcaggtgaactgagaacgatgagagagtccagggagacccagagaacttgcctgctaa 640

                                                                       
Query: 124 acaaagtgcggaagttcctccatcctcactcaccagtcaacctacattttcctaaactaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 639 acaaagtgcggaagttcctccatcctcactcaccagtcaacctacattttcctaaacaaa 580

                                                                       
Query: 184 gtggcgagaacttggagtcactgaccatcaaaacgccctcatcccagatttcagagaaca 243
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 579 gtggcgagaacttggagtcactgaccatcaaaacgccctcatcccagacttcagggaaca 520

                                                                       
Query: 244 acctcaagctagactgatattccaaaattcaagcaacagcgagaataaaattagtatttt 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 519 acctcaagctagactgatattccaaaattcaagcaacagcaagaataaaattagtatttt 460

                                                                       
Query: 304 ccttctgatgagtctactggtattcaccctgaagaccctgcgtaatggagctaagaacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccttctgatgagtctactggtattcaccctgaagaccctgcgtaatggagctaagaacag 400

                                                                       
Query: 364 tgtgctctgcctgtggtggggttaatgttcagcaaaattccctcctctgtgactctaatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtgctctgcctgtggtggggttaatgttcagcaaaattccctcctctgtgactctaatg 340

                                                                       
Query: 424 tacttaaaccttgacatcaggctgatttatctcacccagggctacttactgtatcagaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tacttaaaccttgacatcaggctgatttatctcacccagggctacttactgtatcagaaa 280

                                                                       
Query: 484 atcaaagcctgcgttactatctttaacacacacaatagaggctgtatgttgcaagccgct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atcaaagcctgcgttactatctttaacacacacaatagaggctgtatgttgcaagccgct 220

                           
Query: 544 gtccactaaaaggcag 559
           ||||||||||||||||
Sbjct: 219 gtccactaaaaggcag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_n06.g1 MSMg01no534_n06.g1 CHROMAT_FILE:
MSMg01no534_n06.g1 PHD_FILE: MSMg01no534_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:28 2005
         (614 letters)



>mm_chr3_41223414_41224427
          Length = 1014

 Score = 1156 bits (598), Expect = 0.0
 Identities = 610/614 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaagctctcaggcgacttagcctagcttatccaaagagaaaccctgtcttacacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaagctctcaggcgacttagcctagcttatccaaagagaaaccctgtcttacacaag 260

                                                                       
Query: 61  gaggaaggggacattgtcctttgaactccgaatgtgtgccatgacaggacacgtgtgtgc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaaggggacatcgtcctttgaactccgaatgtgtgccatgacaggacacgtgtgtgc 320

                                                                       
Query: 121 ctgcatgtgtatacacataaatagccaggcccacagcatatgcaaggatgagtttcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcatgtgtatacacataaatagccaggcccacagcatatgcaaggatgagtttcaagg 380

                                                                       
Query: 181 aaagatgatagaaccgtgaataaaactctgcatgctgcttcatgagaggagtgggaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagatgatagaaccgtgaataaaactctgcatgctgcttcatgagaggagtgggaggga 440

                                                                       
Query: 241 agggggagtcacttttctacagaacgatgacagctaataaagtagacagcagacccattc 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggggagttgcttttctacagaacgatgacagctaataaagtagacagcagacccattc 500

                                                                       
Query: 301 ccataatagtttcaccacacccgcagcaacaacgggtcagctgagggccaggacatgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccataatagtttcaccacacccgcagcaacaacgggtcagctgagggccaggacatgcta 560

                                                                       
Query: 361 atactgttggtgaacgatggttggaaaaacaggtcattcacaagtcttagattttcaaat 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 atactgttggtgaacgatggttggaaaaacagttcattcacaagtcttagattttcaaat 620

                                                                       
Query: 421 agcaaaggaatggggtgtaacttgtggatagaatgtctcccaagtatatatgaggctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaaaggaatggggtgtaacttgtggatagaatgtctcccaagtatatatgaggctctg 680

                                                                       
Query: 481 ggcttaatcgccagcactggcaacaaataaacaaactcattaatcaatttaaaaatcagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcttaatcgccagcactggcaacaaataaacaaactcattaatcaatttaaaaatcagc 740

                                                                       
Query: 541 tatcagatcaacatccacttatcaagaggaaactatgcttttgtaagaggcgaacatctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatcagatcaacatccacttatcaagaggaaactatgcttttgtaagaggcgaacatctt 800

                         
Query: 601 aactcgggtaatat 614
           ||||||||||||||
Sbjct: 801 aactcgggtaatat 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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