BAC Information

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BAC

Clone NameMSMg01-534O14
Chromosome3 (Build37)
Map Location 40,758,838 - 40,759,464
singlet/doubletsinglet
Overlap geneLarp2
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O14.T7 (MSMg01no534_o14.b1)MSMg01-534O14.TJ (MSMg01no534_o14.g1)
ACCAG602486AG602487
length945765
length of high quality
(start - end)		---631 (66 - 696)
definitionCHROMAT_FILE: MSMg01no534_o14.b1 PHD_FILE: MSMg01no534_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:34 2005CHROMAT_FILE: MSMg01no534_o14.g1 PHD_FILE: MSMg01no534_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGGCGGCGTGCATCCGACTCCCCTTCCGCGGGCCCGCGGGGCGGGGTT
TCTTTCCGCGGTGGGGGCCTCGGGTCTGTGCCTATTTCTGTCGTCCCCTC
TTTTTGCTGTTTTTGCCCCCTCTTTTTTCCCCTTTTTTTTCTTTTGCCGC
ATCGTTTTTTCGTGGAATTCCGGCCCTCTGTTTTGGGGCCGGGAGGGGGC
ACGCGTTTCCGTTGTGCCTCTCTCCTTCGGTGGTGGCTAGTAACCCCCCG
TCGCAGTAAGGTTCTCGTCCGCTCCGTCCTGAACATTCGCTCTTTCATCT
GTTTATCTTTCTTCCCCTCCTTGGTGGCTCGCTCCATTTTCTGCACTCGG
TGGTTTCCGTTCCCCGATCTAGCCTCGCCGCCTTTCTCGGTTATGATCGC
CCTCATCCGCCGCGCGTCTCCCTTTGTGCCCGTCACACTGTCTTCGCGCC
TCATTTCCGGTCGCGCTCTTTTTCATGGGTGTTAGGTTTGGCCGTCATTT
GCTGGTCGTTTCCCCGTTTGCTTTTTTCCCCTCTGGCCGCGCGCCTTTTA
CGCGTCCTTCGCGGCCACCGATATTCCTGCTTTCACCTGCCTTTTTTCGC
CTGTTCACATTTGCTACCGCCCTTCACTTTTTTTATCCTAATCTAGGCGT
CGTCGCCCATATCTCCTACGCCGCTGATTCTCGTTCGTCTATGACCCCAC
CGCAGACGCAGTGTCGTCGCATTTCTCCCCTTTCTTTGTTTTTGTCCCCC
CCGCTCCTCGTTGTTTTTCCGTGCTCTCCTCTTATTTCCTCCTTTCCCGT
CGCTTGTCTTCCGCGCTCCTTCCCCCCTTCGTTTTTTTTGCTGCGTGCGT
TCGATTTCTCGCCCGTTCCCGCCCTGTATGTCGTCCGCCGCCGTTTTGTC
TCCCTACACGCGTCCCTCTTCTTCCTTTATCTCTCTTGTTGTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTATGTAGACTAGACTGGCCTCACAAGCCTTCCT
AGTGCTAGGATTAAAGGCAAGTGCTACCATGCCTGGCGGCTATGTTGCTT
TTTATCAACCTACTTCCTCCCTTTTTTTTTTTTTTTTTTTTTCAGGAATC
GTAAGTTTGCTGTTAGTGCCCTCATGAAATACATCTTAAAAGCAAATTCT
ATTTTATTATAAAATAAGTATGTAATATAAAGATGTAAAATAGCACATAT
TATATATCCTTATAATTTGTAAAAATAAAACTCTTGGGGCTTGTGCACAC
ATACCACACAGATGACCTTTTGATCTTGTGATATTCCCTTCAAAAAGCGT
CATGTTACTGATTAATCTGTTTACTAATTTTTTAAAGACCTTTTTAACAA
TTACTTTCCAACAAGTGAATTCTATAGAACATATGAAACATAAAGTTTCA
TTCACAGTACTGGATGATTGCTGGGTGGTGGTACTTGCCTTTAATCCTAG
TACTCAGGAGGCAGAGAGGTAGGCTGATCTCTTGAGTTTGAGGCCAGCCT
GGTCTACAGAGTGAGTTCAGGACAGCTAGAGCCACACAGAGAAACCTTGC
CTCAAAAAACAGAAAACAAAACAAAACAAAAAACAAAAAGGTACTGAGTG
ATTTTTAAATTAAATTTAATTTTTTTGAGAAAGGGCTTTGTGTACCTTAN
GCTGGCCTGAAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o14.g1 MSMg01no534_o14.g1 CHROMAT_FILE:
MSMg01no534_o14.g1 PHD_FILE: MSMg01no534_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:34 2005
         (631 letters)



>mm_chr3_40758637_40759667
          Length = 1031

 Score = 1147 bits (593), Expect = 0.0
 Identities = 621/633 (98%), Gaps = 8/633 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagactagactggcctcacaagccttcctagtgctaggattaaaggcaagtgct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 202 actatgtagactagactggcctcacaagcctttctagtgctaggattaaaggcaagtgct 261

                                                                       
Query: 61  accatgcctggcggctatgttgctttttatcaacctacttcctccctttttttttttttt 120
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accatgcctggc---tatgttgctttttatcaacctacttcctccctttttttttttttt 318

                                                                       
Query: 121 ttttttt--caggaatcgtaagtttgctgttagtgccctcatgaaatacatcttaaaagc 178
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 319 tttttttttcaggaatcgtaagtttgctgttagtgccctcatgaaatacatcttagaagc 378

                                                                       
Query: 179 aaattctattttattataaaataagtatgtaatataaagatgtaaaatagcacatattat 238
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 379 aaattctattttattataaaataagtatataatataaagatgtaaaatagcacatattat 438

                                                                       
Query: 239 atatccttataatttgtaaaaataaaactcttggggcttgtgcacacataccacacagat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atatccttataatttgtaaaaataaaactcttggggcttgtgcacacataccacacagat 498

                                                                       
Query: 299 gaccttttgatcttgtgatattcccttcaaaaagcgtcatgttactgattaatctgttta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaccttttgatcttgtgatattcccttcaaaaagcgtcatgttactgattaatctgttta 558

                                                                       
Query: 359 ctaattttttaaagacctttttaacaattactttccaacaagtgaattctatagaacata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctaattttttaaagacctttttaacaattactttccaacaagtgaattctatagaacata 618

                                                                       
Query: 419 tgaaacataaagtttcattcacagtactggatgattgctgggtggtggtacttgccttta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 619 tgaaacataaagtttcattcacagtactggatgattgctgggtggtggtacatgccttta 678

                                                                       
Query: 479 atcctagtactcaggaggcagagaggtaggctgatctcttgagtttgaggccagcctggt 538
           |||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||
Sbjct: 679 atcctagtactcaggaggcagag--gtaggctgatct-ttgagtttgaggccagcctggt 735

                                                                       
Query: 539 ctacagagtgagttcaggacagctagagccacacagagaaaccttgcctcaaaaaacaga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctacagagtgagttcaggacagctagagccacacagagaaaccttgcctcaaaaaacaga 795

                                            
Query: 599 aaacaaaacaaaacaaaaaacaaaaaggtactg 631
           |||||||||||||||||||||||||||||||||
Sbjct: 796 aaacaaaacaaaacaaaaaacaaaaaggtactg 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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