Query= MSMg01no534_p18.b1 MSMg01no534_p18.b1 CHROMAT_FILE:
MSMg01no534_p18.b1 PHD_FILE: MSMg01no534_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:40 2005
(700 letters)
>mm_chr3_79680934_79682033
Length = 1100
Score = 1305 bits (675), Expect = 0.0
Identities = 684/687 (99%)
Strand = Plus / Minus
Query: 14 gaattcacagaattaaaataagttaatatcttagtctgcctagccactcaacatcacttc 73
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaatccacagaagtaaaataagttaatatcttagtctgcctagccactcaacatcacttc 841
Query: 74 cccagccctatgggttcagcctctttctctaagcaaggttataacatgtagctaggaaat 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cccagccctatgggttcagcctctttctctaagcaaggttataacatgtagctaggaaat 781
Query: 134 actgtcttcaaaattcagcctattggtttataaagtttatgcatatggtttttcatacat 193
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 780 actgtcttcaaaattcagcctatcggtttataaagtttatgcatatggtttttcatacat 721
Query: 194 cgtcatgcatggctcaatcacagtgggaaaaaaatcagagaaagatcacaattcaccatc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cgtcatgcatggctcaatcacagtgggaaaaaaatcagagaaagatcacaattcaccatc 661
Query: 254 tacaggatgaaaaccaagaacagacatggttgggtgcggtcaggctagctaagggaagca 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tacaggatgaaaaccaagaacagacatggttgggtgcggtcaggctagctaagggaagca 601
Query: 314 tccagaagaaaacagccccatactaactgacagccttctatactaaaattaccctgcttc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tccagaagaaaacagccccatactaactgacagccttctatactaaaattaccctgcttc 541
Query: 374 ccacggaagctcaaggcccatgctcacataacttgtagagcaactaaaatgtagaaacct 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ccacggaagctcaaggcccatgctcacataacttgtagagcaactaaaatgtagaaacct 481
Query: 434 aaaagccttttctcagaagcctggagtctgttctgaaattaaaaaaggaatgggtgcacg 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaaagccttttctcagaagcctggagtctgttctgaaattaaaaaaggaatgggtgcacg 421
Query: 494 aggtacagaagagcactaaatgtcttccgaagaatgagtggtcttttcctgagtacaact 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggtacagaagagcactaaatgtcttccgaagaatgagtggtcttttcctgagtacaact 361
Query: 554 caccttcgctgctcctccacaggagagaatgcacaacggacttcagtcctttagagaacg 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 caccttcgctgctcctccacaggagagaatgcacaacggacttcagtcctttagagaacg 301
Query: 614 gagccatccttgactgcagtaatcaccagctcagaggcaattccttgtttcatttttgca 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagccatccttgactgcagtaatcaccagctcagaggcaattccttgtttcatttttgca 241
Query: 674 ctaattgcttacaacgtggaagtaggc 700
|||||||||||||||||||||||||||
Sbjct: 240 ctaattgcttacaacgtggaagtaggc 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_p18.g1 MSMg01no534_p18.g1 CHROMAT_FILE:
MSMg01no534_p18.g1 PHD_FILE: MSMg01no534_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:40 2005
(531 letters)
>mm_chr3_79540065_79540995
Length = 931
Score = 984 bits (509), Expect = 0.0
Identities = 523/531 (98%), Gaps = 6/531 (1%)
Strand = Plus / Plus
Query: 1 ttatagcctggagcatctttggtatcacatcagtcaacattccttcttatcctgctctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatagcctggagcatctttggtatcacatcagtcaacattccttcttatcctgctctga 260
Query: 61 acactttttatatacatcttaagttcttcctactagatcatctgttgtagaatattcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactttttatatacatcttaagttcttcctactagatcatctgttgtagaatattcttt 320
Query: 121 tgggtctctcaatctatgcacctccttgagattgaataggaaatgttgaaattgatcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtctctcaatctatgcacctccttgagattgaataggaaatgttgaaattgatcatt 380
Query: 181 aatttcaaagagcttttgctgcaaatgtcaaaagctcaggtatagctcgtgtgtgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttcaaagagcttttgctgcaaatgtcaaaagctcaggtatagctcgtgtgtgtgtgt 440
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgtgtatttatagccctgataccttaaatactggattat 300
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgt------atttatagccctgataccttaaatactgaattat 494
Query: 301 aattagaaagacccagtcttttattatgatttgcagtttgagattttcttactttagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aattagaaagacccagtcttttattatgatttgcagtttgagattttcttactttagata 554
Query: 361 aagtatgaatgtcacagttaagattgagatatagaaaattaggagccgaatagtctcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagtatgaatgtcacagttaagattgagatatagaaaattaggagccgaatagtctcagg 614
Query: 421 gattctgggttatttctctagttttgaaattgtctcaatctttaactatttagttgtact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gattctgggttatttctctagttttgaaattgtctcaatctttaactatttagttgtact 674
Query: 481 gtggtcagagggaaaaagaaaaaaaatcatctaaatagatgctatcagaat 531
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 675 gtggtcagagggaaaaagaaaaaaaatcatcaaaatagatgctatcagaat 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
