TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAACTTCTTTGTCCTCCCCATTTTGGTACAGAGATTGCAAGAAC
CTGGTGCTAGAGTTGACTGTTTTGTTTTGTTTTGTTTTGTTTTCTTGGAA
GGCTCTGCTAAGAAACCAGCTTCATGGCTGGAGTCTTGGCTGAACTGGTA
AAGTGCCCTTTGCACAAGGATCACCATGTAAATCCAGATCCCTGGACCCC
GTGTAAAAGAAAAGAAAATCTGAGCATGGTCCTATATGACTGTGGTTGCA
ACCTTAGTGCAGGGCCTGCAGAGACAGGAGTGATCTCTGAAGCTTAGTCC
CAGCCAGTCTAGGACCATGAGTGAGTACCAAGTTTGGTGAGACACCCTGA
TTTAAAAGATAATGTGGAAATCAATAACAGAAAAGAGCACCTATTGTGAT
CTGTATGTTTGTCTCTGTTTCTCTGCATGTATGTGTCTCTCTTTGCCTGT
CTCTGTCTCCCTGTCCCTCTCTCTGCTCTCTCTTTATTTCTGTCTCTGTC
TCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACACACACACACAC
ACACACACACACACACACACTCACATCTATAGAGATAGATAGATAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGAGTTGGGGAGGCNAA
CCTGGGTCTGTNAGTGGTGACACATTCTTTCTGGGGCCCTTCTCTGAAAA
TTAGATGCTGGACA

NCCATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATGTCCAACATCTCCTTCTATTTA
CCCACCAATCCACTCATTTGAAAGTTATTTATTTTGTACCTGTACACATA
ACAGATTGTTTCAGAAACATTCCACAAAATAAGACATTGGTTGTGTGCTA
TCTCTCATAAAGTACTGAGCAGGAGGTGATGAACTGAGGGCTAACAGTAA
AGGACACATCACCAAACTATCCAACAGTGTAGGTAAACTGACCTCAAAAA
TAAGTAGGGAGACTTATTAATTCCTCATAGTAATTGGTTAGGGACAATTC
CCTTCATAGTATTTCAAGCCAAAGCACAAATGAGGCAGAAAGCTGTCACA
TCAGCTGTCTAGTTGGACTTAAATTGGAAAAAAAAAAAAAGGCTTTCTCT
CCATCATGTACAAGAGTTAGGCAGTACTAATGTCTCACTAAATCCTACCC
TCATCTGGGGTCACCTGGATGCCATCAAAAATGCAAATCACCCACTTCAG
TTTAAAGCAAACAAAGCAGTCTAAGGTAGCTTCTTCATCCCTGGCAGAAT
CCCAGAATCCTTTACTATACCTCCCTTCCTCTCCCAGCACAAAAGCCAGG
CCTGTTAGGAAAACATGGGGAGAAGAGATGTCTCAGACACAGATAACAAC
AAACCCTTCCATTGTCCTTCTTGGGTCTTGGGTTCTATTGGGATTATGAT
ACCAGTTCC

Query= MSMg01no535_a04.g1 MSMg01no535_a04.g1 CHROMAT_FILE:
MSMg01no535_a04.g1 PHD_FILE: MSMg01no535_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:42 2005
         (576 letters)



>mm_chr3_29043611_29044583
          Length = 973

 Score = 1013 bits (524), Expect = 0.0
 Identities = 562/576 (97%), Gaps = 3/576 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgtccaacatctccttctatttacccaccaatccactcatttgaaagttatttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caatgtccaacatctccttctatttacccaccaatccactcatttgaaagttatttattt 714

                                                                       
Query: 61  tgtacctgtacacataacagattgtttcagaaacattccacaaaataagacattggttgt 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 713 tgtacctgtacacataacagattgtttcagaaacattcaacaaaataagacattggttgt 654

                                                                       
Query: 121 gtgctatctctcataaagtactgagcaggaggtgatgaactgagggctaacagtaaagga 180
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 653 gtgccatctctcataaagtactgagcaggaggtgatggactgagggctaacagtaaagga 594

                                                                       
Query: 181 cacatcaccaaactatccaacagtgtaggtaaactgacctcaaaaataagtagggagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cacatcaccaaactatccaacagtgtaggtaaactgacctcaaaaataagtagggagact 534

                                                                       
Query: 241 tattaattcctcatagtaattggttagggacaattcccttcatagtatttcaagccaaag 300
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 533 tattaattcctcatagtaattgcttaaggacaattcccttcatagtatttcaagccaaag 474

                                                                       
Query: 301 cacaaatgaggcagaaagctgtcacatcagctgtctagttggacttaaattggaaaaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 473 cacaaatgaggcagaaagctgtcacatcagctgtctagttggacttaaattgg---aaaa 417

                                                                       
Query: 361 aaaaaaggctttctctccatcatgtacaagagttaggcagtactaatgtctcactaaatc 420
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 416 aaaaaaggctttccctccatcatgtacaagagttaggcagtattaatgtctcactaaatc 357

                                                                       
Query: 421 ctaccctcatctggggtcacctggatgccatcaaaaatgcaaatcacccacttcagttta 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 356 ctaccctcatctggggtcacctggatgccatcaaaaatgccaatcacccacttcagttta 297

                                                                       
Query: 481 aagcaaacaaagcagtctaaggtagcttcttcatccctggcagaatcccagaatccttta 540
           ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 296 aagcaaacaaagcagtctaagatagcgtcttcatccctggcagaatcccagaatccttta 237

                                               
Query: 541 ctatacctcccttcctctcccagcacaaaagccagg 576
            |||||||||||||||||||||||||||||||||||
Sbjct: 236 ttatacctcccttcctctcccagcacaaaagccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 973
Length adjustment: 10
Effective length of query: 566
Effective length of database: 963
Effective search space:   545058
Effective search space used:   545058
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)