Query= MSMg01no535_b06.b1 MSMg01no535_b06.b1 CHROMAT_FILE:
MSMg01no535_b06.b1 PHD_FILE: MSMg01no535_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:47 2005
(683 letters)
>mm_chr3_29505935_29507019
Length = 1085
Score = 853 bits (441), Expect = 0.0
Identities = 460/467 (98%), Gaps = 2/467 (0%)
Strand = Plus / Minus
Query: 219 acatatatcttacatatacatatctgtacatacacgtatgtacacatatgcattaataca 278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1085 acatatatcttacatatacatatctgtacatacacatatgtacacatatgcattaataca 1026
Query: 279 tgtataggcacagagatatatcacacacatacacatacatcaatcacacatacatatact 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 tgtataggcacagagatatatcacacacatacacatacatcaatcacacatacatatact 966
Query: 339 catatatcatatacacacaaacacacataacacaaacctatgacacacatatatgtacac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 catatatcatatacacacaaacacacataacacaaacctatgacacacatatatgtacac 906
Query: 399 atacatcacacaaacacacattcataatttaaataactgccttaaattatactccagaag 458
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 atacatcacaaaaacacacattcataatttaaataactgccttaaattatactccagaag 846
Query: 459 aaactaatagtagattaaacattaaatttagtaaaataaaactctgaaaatactcgaggc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 aaactaatagtagattaaacattaaatttagtaaaataaaactctgaaaatactcgaggc 786
Query: 519 ttatttataaatatttgtctataaacaatggggtcttagaggttaaagagaaagaataaa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttatttataaatatttgtctataaacaatggggtcttagaggttaaagagaaagaataaa 726
Query: 579 tttaaaatgctaaggaatatagtatactaaataaatcctaaaaaacaaacatataa--ca 636
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 725 tttaaaatgctaagaaatatagtatactaaataaatcctaaaaaacaaacttataaaaca 666
Query: 637 aaaattgaaaaccaaaaaatagtttccacctacttgcaaaaaaataa 683
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 665 aaaattgaaaaccaaaaaatagtttcaacctacttgcaaaaaaataa 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space: 723475
Effective search space used: 723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_b06.g1 MSMg01no535_b06.g1 CHROMAT_FILE:
MSMg01no535_b06.g1 PHD_FILE: MSMg01no535_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:47 2005
(546 letters)
>mm_chr3_29312531_29313474
Length = 944
Score = 917 bits (474), Expect = 0.0
Identities = 527/546 (96%), Gaps = 4/546 (0%)
Strand = Plus / Plus
Query: 1 cccaggatttgcatggtgaaaagagaattgtcacaaattgtcttctgatctctccacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cccaggatttgcatggtgaaaagagaattgtcacaaattgtcttctgatctctccacaca 262
Query: 61 tgagcaagtaaacagatacatgtgcatatgtgtatgcacacacactcatgtgcacatgca 120
|||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||
Sbjct: 263 tgagcaagtaaacagatacacgtgcatatttgcatacacacacactcatgtgcacatgca 322
Query: 121 catgtgcacacacacacacaagcttgcacacattatcactaagcacacataagtgtgcac 180
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 catgt--acacacacacacaagcttgcacacattatcattaagcacacataagtgtgcac 380
Query: 181 aagcatgcatgtataatttatttttaaaacaaacatgtgatgctgaaatcttgttctggt 240
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 381 aagcatgcgtgtataatttatttttaaaacaaaca--tgatgctgaaaccttgttctggt 438
Query: 241 gctgaacaaattgtgatggattactcgagcaatgagtgaacaggagaaaaggggaagccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctgaacaaattgtgatggattactcgagcaatgagtgaacaggagaaaaggggaagccc 498
Query: 301 cactttctggagtttataaatgaaggaacttcataagtttcttttttctacttcaattca 360
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 cactttctagagtttataaatgaatgaacttcataagtttcttttttctacttcaattca 558
Query: 361 aggtgaccttttgtggggtatatctgaggaaaggggttcttacgtaaaggttcagtatac 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct: 559 aggtgaccttttgtggggtatatctgaggaaaggggttcttatgtaaaggttcggtacaa 618
Query: 421 agtgaagtaggcgaacagcacagggtttggataactgtcctacctaaaagctgcctggct 480
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 619 agtgaagtaggcgaacagcacaggttttggataactgtcctacctaaaagctgccttgct 678
Query: 481 actcttgcattcaagacaacagagcaatgaactgttttctgtactcatgctaattagagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 actcttgcattcaagacaacagagcaatgaactgttttctgtactcatgctaattagagt 738
Query: 541 ttaaaa 546
||||||
Sbjct: 739 ttaaaa 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 944
Length adjustment: 10
Effective length of query: 536
Effective length of database: 934
Effective search space: 500624
Effective search space used: 500624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
