BAC Information

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BAC

Clone NameMSMg01-535E18
Chromosome3 (Build37)
Map Location 11,076,928 - 11,265,679
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
Downstream geneLOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535E18.T7 (MSMg01no535_e18.b1)MSMg01-535E18.TJ (MSMg01no535_e18.g1)
ACCAG602779AG602780
length775778
length of high quality
(start - end)		677 (47 - 723)619 (75 - 693)
definitionCHROMAT_FILE: MSMg01no535_e18.b1 PHD_FILE: MSMg01no535_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:04 2005CHROMAT_FILE: MSMg01no535_e18.g1 PHD_FILE: MSMg01no535_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,076,928 - 11,077,600)(11,265,117 - 11,265,679)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCATGCTAAAAACTCTGAAAATATTAATAATATTCATCATTAT
CAAAGTCAGATCATAGAATTCTCCTTCATTTACCTTGTATTGTTCTCTGA
ACCATACTTCTTTGATGATTTAAAAACACATTCATCTATACACTCACTTC
ATTTAGTTCTATTTTTGAATCAAAAGGCATGTAGTTCATTGTATTGACTC
AATATCACATCTCATTAGACATTTGAATTTTTCCTCTATTAAATGCCAAT
CTACTCACATTGTGACTAAACAGTTCATCAATTATTTTTATCACCAGTTC
AAAGGCTTTTAGAACAAATCATCAATTTTATGGTGTTCTAGTTTAAAATA
TAGTAAGCTTAATCTTAAATGTGAACTATTATGAATTCTTTAGCAGAAAA
GTAGTGGGAATCAGTAGATCTTCATATGAAAAAAGAAAAATTGCAGGCAA
GCATGTCTCTGTACCTCTACTTTTCTCTATCAGCTATTTCTCATTTGTAA
ATGAGAAAAATTGCACTTATAACCTTTTATGATAGTAGTAATTTTACATA
TGTATTATGTTAATTTTTATTTGCTACATTTCTGGCTACGGCATGCATCT
TTTTGGTACCATAGCAAAATTAAGGAGACTATATGACTACTGAACACATT
TTATACTCATCTTTTTAAAAATTGAGAATTTTATACTAAAACAAGGAAGA
GTAAGATAATAGAAAGAAAAATCTG

NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGATTAAGAGGAGCCTCAAAGGTGA
GGAGATGGAGGACTTCATCTCAGCCTCTGAAAACCCAGAAAAACAATGTA
TTCCCTCCATTCTTGGCACTAAGAAGGAGGTGACAGCAAGGTCCCTGCGA
CCAGTAGCTAGCCAGTTTTAATTGGTGAGCTTCAGCTATAAAGAAAGACC
ATGTCTAAAAATTAAAATGGAGAGTAACTGAGAAAGACTTTTGGCATCAA
CCTCTGTTCTCCATACATGCATGCATACTTGCTCTCACACACATACACAC
ACAGCATACACATGTACAGAAATTAGAGAGAAAAGGAGGTGGAAGAGTAT
TAGGTTTCCACATTAAGGTATAACATGCTCTTCCCTGAATGTGATTTCTA
TCCCAGAGAAGAACAATTTCTTGGTTTCACAACTCATAAAGGGACAGTAG
ACGGCCCTGACTTTCCCCCTCTCATTGTATTTTAAGAAGACTAGTGTATC
TGTCTGGGGGCCTTGTAAAGGAACAGCTTTGAGAGGACAGTCAGAAAAAC
TCTTTAGGGAAACAGGAAGAAGTCTTTTGCTACCATCTTCATGCTTCTTA
TATCATGATAGGAAAATAGATATCTTAGAATACATTTTTAGAATACTTAA
AAAAATTCCTATGTTTACAGTTTTAAGAAAAAAATTATGACTCTTAAGTA
TATTAGTAACATATTTCNNATAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_e18.b1 MSMg01no535_e18.b1 CHROMAT_FILE:
MSMg01no535_e18.b1 PHD_FILE: MSMg01no535_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:04 2005
         (677 letters)



>mm_chr3_11076724_11077800
          Length = 1077

 Score = 1294 bits (669), Expect = 0.0
 Identities = 672/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatgctaaaaactctgaaaatattaataatattcatcattatcaaagtcaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatgctaaaaactctgaaaatattaataatattcatcattatcaaagtcaga 264

                                                                       
Query: 65  tcatagaattctccttcatttaccttgtattgttctctgaaccatacttctttgatgatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatagaattctccttcatttaccttgtattgttctctgaaccatacttctttgatgatt 324

                                                                       
Query: 125 taaaaacacattcatctatacactcacttcatttagttctatttttgaatcaaaaggcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaaacacattcatctatacactcacttcatttagttctatttttgaatcaaaaggcat 384

                                                                       
Query: 185 gtagttcattgtattgactcaatatcacatctcattagacatttgaatttttcctctatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtagttcattgtattgactcaatatcacatctcattagacatttgaatttttcctctatt 444

                                                                       
Query: 245 aaatgccaatctactcacattgtgactaaacagttcatcaattatttttatcaccagttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatgccaatctactcacattgtgactaaacagttcatcaattatttttatcaccagttc 504

                                                                       
Query: 305 aaaggcttttagaacaaatcatcaattttatggtgttctagtttaaaatatagtaagctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 aaaggcttttagaacaaatcatcaattttatggtgttctagtttaaaatatagtaagttt 564

                                                                       
Query: 365 aatcttaaatgtgaactattatgaattctttagcagaaaagtagtgggaatcagtagatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatcttaaatgtgaactattatgaattctttagcagaaaagtagtgggaatcagtagatc 624

                                                                       
Query: 425 ttcatatgaaaaaagaaaaattgcaggcaagcatgtctctgtacctctacttttctctat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcatatgaaaaaagaaaaattgcaggcaagcatgtctctgtacctctacttttctctat 684

                                                                       
Query: 485 cagctatttctcatttgtaaatgagaaaaattgcacttataaccttttatgatagtagta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagctatttctcatttgtaaatgagaaaaattgcacttataaccttttatgatagtagta 744

                                                                       
Query: 545 attttacatatgtattatgttaatttttatttgctacatttctggctacggcatgcatct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attttacatatgtattatgttaatttttatttgctacatttctggctacggcatgcatct 804

                                                                       
Query: 605 ttttggtaccatagcaaaattaaggagactatatgactactgaacacattttatactcat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttggtaccatagcaaaattaaggagactatatgactactgaacacattttatactcat 864

                        
Query: 665 ctttttaaaaatt 677
           |||||||||||||
Sbjct: 865 ctttttaaaaatt 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_e18.g1 MSMg01no535_e18.g1 CHROMAT_FILE:
MSMg01no535_e18.g1 PHD_FILE: MSMg01no535_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:04 2005
         (619 letters)



>mm_chr3_11264663_11265681
          Length = 1019

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Minus

                                                                        
Query: 57   aaacccagaaaaacaatgtattccctccattcttggcactaagaaggaggtgacagcaag 116
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1017 aaacccagaaaaacaatgtattccttccattcttggcactaagaaggaggtgacagcaag 958

                                                                        
Query: 117  gtccctgcgaccagtagctagccagttttaattggtgagcttcagctataaagaaagacc 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  gtccctgcgaccagtagctagccagttttaattggtgagcttcagctataaagaaagacc 898

                                                                        
Query: 177  atgtctaaaaattaaaatggagagtaactgagaaagacttttggcatcaacctctgttct 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  atgtctaaaaattaaaatggagagtaactgagaaagacttttggcatcaacctctgttct 838

                                                                        
Query: 237  ccatacatgcatgcatacttgctctcacacacatacacacacagcatacacatgtacaga 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  ccatacatgcatgcatacttgctctcacacacatacacacacagcatacacatgtacaga 778

                                                                        
Query: 297  aattagagagaaaaggaggtggaagagtattaggtttccacattaaggtataacatgctc 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  aattagagagaaaaggaggtggaagagtattaggtttccacattaaggtataacatgctc 718

                                                                        
Query: 357  ttccctgaatgtgatttctatcccagagaagaacaatttcttggtttcacaactcataaa 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  ttccctgaatgtgatttctatcccagagaagaacaatttcttggtttcacaactcataaa 658

                                                                        
Query: 417  gggacagtagacggccctgactttccccctctcattgtattttaagaagactagtgtatc 476
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 657  gggacagtagacggccctgactttccccctcacattgtattttaagaagactagtgtatc 598

                                                                        
Query: 477  tgtctgggggccttgtaaaggaacagctttgagaggacagtcagaaaaactctttaggga 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597  tgtctgggggccttgtaaaggaacagctttgagaggacagtcagaaaaactctttaggga 538

                                                                        
Query: 537  aacaggaagaagtcttttgctaccatcttcatgcttcttatatcatgataggaaaataga 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  aacaggaagaagtcttttgctaccatcttcatgcttcttatatcatgataggaaaataga 478

                                   
Query: 597  tatcttagaatacatttttagaa 619
            |||||||||||||||||||||||
Sbjct: 477  tatcttagaatacatttttagaa 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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