BAC Information

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BAC

Clone NameMSMg01-535I22
Chromosome3 (Build37)
Map Location 24,365,052 - 24,485,755
singlet/doubletdoublet
Overlap geneEG635702
Upstream geneLOC100039548, EG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535I22.T7 (MSMg01no535_i22.b1)MSMg01-535I22.TJ (MSMg01no535_i22.g1)
ACCAG602978AG602979
length735745
length of high quality
(start - end)		603 (55 - 657)653 (85 - 737)
definitionCHROMAT_FILE: MSMg01no535_i22.b1 PHD_FILE: MSMg01no535_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:24 2005CHROMAT_FILE: MSMg01no535_i22.g1 PHD_FILE: MSMg01no535_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,485,156 - 24,485,755)(24,365,052 - 24,365,704)
sequence
NNNNNNNACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGTCAGTTACACTCACAGGTATCTGGACTTTGTTT
CTGAAGTGGATGACAGTTTAACTAATAGGAATTTAATAAAGACCATCTAA
CAAAAACATCAATGCACAGGATGAAAAGCCAGCATGTTGACCTTGATGCC
CAAGAGAATTCCAAACACAGTGCCTATTGCTTTTGCCTTTATTCCATAAG
TGGAATGTAAGCCTTTATTTGAATTCTTTTGTATTTATTTTAAAAAATGC
AAGCCCATGCTTTGTTTTATTTTTATTTTATTTTGTATTACTTATTTTAT
TTTATTTTCTTAAATTTCAAATGTTATTCCCCTTCTGGGTTTCCCCTCTG
CAAAGCCCCTATCACATCACCTCTCCCCACTTTCTCTATGAGAATGTTTA
CTCACCTACCAACCCACTCCCACCTCACCACTCTAGCATTCCCCTACACT
GGTGCATCCAGCCTCCACAATATCAAGGGCCTCTCCTCCCATTGATGCTA
GATAAGGCAATCCTCTGTTACATATGCAGCTGGGGACTTGCTTCCTTCCA
TGTGTACTCTTTGGTTGGTGGTTTATTTGCTGGGAGCTCTGGGGGGTCCG
GTTAGTTGATATAGTTGTTCTTCTTATGGAGTTGCAATCCACTTCAGCTC
CTTCAGTCCTTCCCCTAACTCTTCTACTGGGGTCC

NAATTTCCAGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCTCTGAAAGCA
GTGATTTCTTTCCATTTCATTCTATGCGCACTGTTCTGGTCCTTAGCTGG
AGTTGAGAAGGCTATAAAGAGAAGTCAGCCTCATGTATTCCCTAAGCTTT
CTGTATTAAGATCACTGTTCAATTTTTCTGTTGTTTCATGGTTGAAGGGT
GAGCACCATTGCTAGCACTGCCACCGGTATTATAGGTTCAAACTGTCTGC
TAGACCTGTATTCTGCTAAAATTAATGGCAATGAGAGTTCACAAGAGTCA
GAAGCATGAATGAGAATAAAAAGAGATTTTTCAGTGTGAGGTGCTAATTT
TTGTTGACCTAGATTCAGCAGTTCAGTTTGTTGTATTAACCTATACTGGC
ACAAAGCATATGATTACACTCAGATCACAGGCAAATGCATATTAACTGCA
GATAATATTGAAAAGACGAAAGGGATGAGAAGAGTTATCAATGCAGTGAC
GTGTGAGAACAAAGCACTTAACACTTCACAGATCCATTGTTTGTCTTTGC
TCCTTGCGGGTACCCTTCTGTTCTACTTAGACCTCAGCACAGAACTAGAA
GGTAATATGAAAGTTAAAGCTTGCAGAGCAGGCAGGCACATACCCCACTT
GTCAGCTCATCCTGCATTCCTTATGACAGCCTAACAAAATTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_i22.b1 MSMg01no535_i22.b1 CHROMAT_FILE:
MSMg01no535_i22.b1 PHD_FILE: MSMg01no535_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:24 2005
         (603 letters)



>mm_chr3_24485086_24486088
          Length = 1003

 Score = 1129 bits (584), Expect = 0.0
 Identities = 596/600 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggtcagttacactcacaggtatctggactttgtttctgaagtggatgacagt 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 670 ggaattcaggtcagttacactcacaggtctctggactttgtttctgaagtggatgacagt 611

                                                                       
Query: 64  ttaactaataggaatttaataaagaccatctaacaaaaacatcaatgcacaggatgaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaactaataggaatttaataaagaccatctaacaaaaacatcaatgcacaggatgaaaa 551

                                                                       
Query: 124 gccagcatgttgaccttgatgcccaagagaattccaaacacagtgcctattgcttttgcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gccagcatgttgaccttgatgcccaagagaattccaaacacagtgcctattgcttttgcc 491

                                                                       
Query: 184 tttattccataagtggaatgtaagcctttatttgaattcttttgtatttattttaaaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttattccataagtggaatgtaagcctttatttgaattcttttgtatttattttaaaaaa 431

                                                                       
Query: 244 tgcaagcccatgctttgttttatttttattttattttgtattacttattttattttattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgcaagcccatgctttgttttatttttattttattttgtattacttattttattttattt 371

                                                                       
Query: 304 tcttaaatttcaaatgttattccccttctgggtttcccctctgcaaagcccctatcacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcttaaatttcaaatgttattccccttctgggtttcccctctgcaaagcccctatcacat 311

                                                                       
Query: 364 cacctctccccactttctctatgagaatgtttactcacctaccaacccactcccacctca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cacctctccccactttctctatgagaatgtttactcacctaccaacccactcccacctca 251

                                                                       
Query: 424 ccactctagcattcccctacactggtgcatccagcctccacaatatcaagggcctctcct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 250 ccactctagcattcccctacactggtgcatccagcctccacaatatcaaggacctctcct 191

                                                                       
Query: 484 cccattgatgctagataaggcaatcctctgttacatatgcagctggggacttgcttcctt 543
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 190 cccattgatgctagataaggcaatcctctgttacatatgcagctggggccttgcttccct 131

                                                                       
Query: 544 ccatgtgtactctttggttggtggtttatttgctgggagctctggggggtccggttagtt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccatgtgtactctttggttggtggtttatttgctgggagctctggggggtccggttagtt 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_i22.g1 MSMg01no535_i22.g1 CHROMAT_FILE:
MSMg01no535_i22.g1 PHD_FILE: MSMg01no535_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:25 2005
         (653 letters)



>mm_chr3_24364852_24365904
          Length = 1053

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccctctgaaagcagtgatttctttccatttcattctatgcgcactgttctggtcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccctctgaaagcagtgatttctttccatttcattctatgcgcactgttctggtcctt 260

                                                                       
Query: 61  agctggagttgagaaggctataaagagaagtcagcctcatgtattccctaagctttctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctggagttgagaaggctataaagagaagtcagcctcatgtattccctaagctttctgt 320

                                                                       
Query: 121 attaagatcactgttcaatttttctgttgtttcatggttgaagggtgagcaccattgcta 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaagatcactgttcaatttttctgttgtttcatggttgaagggtgagcaccattgcta 380

                                                                       
Query: 181 gcactgccaccggtattataggttcaaactgtctgctagacctgtattctgctaaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactgccaccggtattataggttcaaactgtctgctagacctgtattctgctaaaatta 440

                                                                       
Query: 241 atggcaatgagagttcacaagagtcagaagcatgaatgagaataaaaagagatttttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggcaatgagagttcacaagagtcagaagcatgaatgagaataaaaagagatttttcag 500

                                                                       
Query: 301 tgtgaggtgctaatttttgttgacctagattcagcagttcagtttgttgtattaacctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgaggtgctaatttttgttgacctagattcagcagttcagtttgttgtattaacctat 560

                                                                       
Query: 361 actggcacaaagcatatgattacactcagatcacaggcaaatgcatattaactgcagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actggcacaaagcatatgattacactcagatcacaggcaaatgcatattaactgcagata 620

                                                                       
Query: 421 atattgaaaagacgaaagggatgagaagagttatcaatgcagtgacgtgtgagaacaaag 480
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 621 atattgaaaagacgaaagggatgggaagagttatcaatgcagtgacatgtgagaacaaag 680

                                                                       
Query: 481 cacttaacacttcacagatccattgtttgtctttgctccttgcgggtacccttctgttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacttaacacttcacagatccattgtttgtctttgctccttgcgggtacccttctgttct 740

                                                                       
Query: 541 acttagacctcagcacagaactagaaggtaatatgaaagttaaagcttgcagagcaggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acttagacctcagcacagaactagaaggtaatatgaaagttaaagcttgcagagcaggca 800

                                                                
Query: 601 ggcacataccccacttgtcagctcatcctgcattccttatgacagcctaacaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcacataccccacttgtcagctcatcctgcattccttatgacagcctaacaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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