NNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATTGCATACAATTAACCAACATAGTTAATCTTATAGAA
AGTAGATAATGATCTATGGGACCATCAGCACTCTAGTCCCATTGTGACGT
ACTATGCTGGATGCGCTCTTACCAATTCTATTCCACTTACCCTAGATTTC
AGTGCTCTTCCCAGGCAACTCAATTACGTCTCCCCTAAACCTTACCTCTT
TTCCTTACCCTTTCAAGTCTTTGCTTCAGCCCCATCCTTAGATTCTGAGA
TCTGTAGTAATTTGTACAGGATTCTCTCTATCTTTTACAACCTCGCCCCA
ATTGCTCAGACAATAACTGACTCCCAGTCATTCTTCAGGAATCTGTACTA
CACGAGAAAGATTGATGTCTATTTCGTAGGCGGTCATTGTATGAATGGCA
GCTTTATACACTACAGTAGGTCCTCAAGAACAAATGAATAGATGAATGAA
TTAATGAAGTGACTTAAAACAGATGTGTGACCCCAAACACAAAGACGTCT
AGTAACTTAGCTTCTCAAACAGCAGGGACATGAGGAGAAAACCAAGCGTG
TCTCACCACAGACTCGTATTCTTCCCAAGTCTTCATGCAACCCTGGCTTT
AATGAAAACATAAAGCTGTGTCCCTTATACCCGAGATTGCTGCTGAGAAC
TAAACCAGAAGAAAGACAGATGTCTGCATTGTTTTGGTTTGAGTACAGAA
GGTTTTGN

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCATCTGATTCAGAGCTACCAA
GAGCTGGCTCCCCGAGCCCATCCAGCGATGAGCACAGGCTCCTTTTCCTA
GAGACCTCCGCTAATTGATCTTTCTTCTTTTCCCTTTTTCCTCTTTTTCT
TCTAATCTCTCTCCAGGTATTCCTACCTAACCTTAACTTTTCCTCGGGTT
CAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTCCTC
TTTGTTCCTACTCTCTCTCCCCACTTTACTTCTGATAGCTTGTCCTGAAT
TTCCTCTAGAATTTTCAGCCCTATCTTAATCACTTGATAACATGTGAAAA
GGAACAAAAGGGCTCCTAACACCAGAAAAAATTCAAGGCCAAACATATTC
CACTTTACTTCTGATAGACTGTCCTGAATTTCCTTAGAAAGTTCAAGACC
AGACTTACCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGA
AAAGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGG
GAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTT
CCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTG
TTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAA
TCTTCTGCGGCAAA

Query= MSMg01no535_j23.b1 MSMg01no535_j23.b1 CHROMAT_FILE:
MSMg01no535_j23.b1 PHD_FILE: MSMg01no535_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:29 2005
         (682 letters)



>mm_chr3_151503673_151504754
          Length = 1082

 Score = 1288 bits (666), Expect = 0.0
 Identities = 675/678 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttattgcatacaattaaccaacatagttaatcttatagaaagtagataatgat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 gaattctttattgcaaacaattaaccaacatagttaatcttatagaaagtagataatgat 823

                                                                       
Query: 65  ctatgggaccatcagcactctagtcccattgtgacgtactatgctggatgcgctcttacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctatgggaccatcagcactctagtcccattgtgacgtactatgctggatgcgctcttacc 763

                                                                       
Query: 125 aattctattccacttaccctagatttcagtgctcttcccaggcaactcaattacgtctcc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 762 aattctattccacttaccctagatttcagtgctcttcccaggcaactcaattacttctcc 703

                                                                       
Query: 185 cctaaaccttacctcttttccttaccctttcaagtctttgcttcagccccatccttagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cctaaaccttacctcttttccttaccctttcaagtctttgcttcagccccatccttagat 643

                                                                       
Query: 245 tctgagatctgtagtaatttgtacaggattctctctatcttttacaacctcgccccaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctgagatctgtagtaatttgtacaggattctctctatcttttacaacctcgccccaatt 583

                                                                       
Query: 305 gctcagacaataactgactcccagtcattcttcaggaatctgtactacacgagaaagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gctcagacaataactgactcccagtcattcttcaggaatctgtactacacgagaaagatt 523

                                                                       
Query: 365 gatgtctatttcgtaggcggtcattgtatgaatggcagctttatacactacagtaggtcc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 522 gatgtctatttcgtaggcggtcattgtatgaatggcagctttatacactacagtagatcc 463

                                                                       
Query: 425 tcaagaacaaatgaatagatgaatgaattaatgaagtgacttaaaacagatgtgtgaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaagaacaaatgaatagatgaatgaattaatgaagtgacttaaaacagatgtgtgaccc 403

                                                                       
Query: 485 caaacacaaagacgtctagtaacttagcttctcaaacagcagggacatgaggagaaaacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaacacaaagacgtctagtaacttagcttctcaaacagcagggacatgaggagaaaacc 343

                                                                       
Query: 545 aagcgtgtctcaccacagactcgtattcttcccaagtcttcatgcaaccctggctttaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aagcgtgtctcaccacagactcgtattcttcccaagtcttcatgcaaccctggctttaat 283

                                                                       
Query: 605 gaaaacataaagctgtgtcccttatacccgagattgctgctgagaactaaaccagaagaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaaacataaagctgtgtcccttatacccgagattgctgctgagaactaaaccagaagaa 223

                             
Query: 665 agacagatgtctgcattg 682
           ||||||||||||||||||
Sbjct: 222 agacagatgtctgcattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)