NNNCCCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACCGAGGAATACTGAGTGTCTGAGAAGCACCTAAAACA
AATGTTCAACATCCTTAGTCATCAAGGAAATTCAAATTAAGACAACCCTG
AGATTCTACCTCACATCACTCAGAATGGCTAAGATCAAAAACTCAGGTAA
CAGCAGATGTGGTAAGGATGTGGAGAAAGAGGAACACTCCTTCATTGTTG
GTGGAATTGCAGGCTGGTACAACCAATCTGGAAATCTGTTTGGGAGTAGC
TCAGAGAATTGGACATAGTACTACAGGAGGATTCAGGAATGCCTCTCCTG
GAGCATATACCCAGAAGATGCTCCAACTTGTAATGAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCCAGAAAGATCCC
AGATGTCCCTCAGTAGAGGAATGGATACAGAAAATATGGTACATTTACAC
AAGGGAGTACTACACCGCTATTAAAAACAATGAATTTATGAAATTCTTGG
GCAAATGGATAGATCTGGAAGATATCGTCCTGAATGAGGTAACTCAATCA
CACACACACGCACACACACACACACACACACACACACACACACACACACA
CACACAAATGATATGCACTCACTGATAAGTGGAGATTAGCCCAGAAGCTC
GGAATACCCAAGATACAATTCGCAAAACACATGAAACTCTAGAAGAAGAA
AGACCAAAGTGTGGATATTTCGATCATTCTTA

TTTCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGTGATGCTCTCCAAAA
TGAGGAAGAATTAACACAGGAGACAAACAAACAAACAAACAAACAAACGA
AGGACTAGTAAGATATTGGACAAAATGAAAGTGTTGAGATCTAGAATTCA
AATGAAAAAGAGTTTTCAAGTTGAGAAATAAGAAGAATTAACTCAGACTA
CATTGATAGTTCATCAATAGAGAACCATCAGTGACCAGTGTACTTAGTAA
GGTAAAAGGTCACTATGACCGTGAAGCAACCTATAGGAGGGATGTAATGA
ATGTTAAAGAATGAGGTTTGATTTAAGAGTGGATGGAGAGAAAGACCATA
TAGATAATACAGATAATAGAGAAACGATCTGTCTAAAGTTATTGTAGTGA
GGAAGACAGTTGGGAGAAAACAGCAGGAAGCTTTTGTTCTTTTACTTTAG
GTCTGAACAAATAGTAGTACATATATATTCTTAAACATGTAGACTAAAGT
ATCTAGATGATACAGTGCAATGCAGAGTCAGGAAAGCTGTTGTGATGGTC
TTGGGACATGCAAGAGAGCATGTTCCAATTGTGGAGAGACAGCTTGGGAG
AAAGCCAGGCTGACTTTCCTGTACCAACATGCANGCAGTCAGGCAGTATA
GTGCAGAGGCTGGGTGGGAAAGAAACATCTTCTGAGAAGTTCAGAATTCT
CAGTGGTGTGTGTGCAGCCCAGATGAGCATGGAGATGACA

Query= MSMg01no535_k21.g1 MSMg01no535_k21.g1 CHROMAT_FILE:
MSMg01no535_k21.g1 PHD_FILE: MSMg01no535_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:34 2005
         (551 letters)



>mm_chr3_157969746_157970696
          Length = 951

 Score =  961 bits (497), Expect = 0.0
 Identities = 534/551 (96%), Gaps = 8/551 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgtgatgctctccaaaatgaggaagaattaacacaggagacaaacaaacaaacaaac 60
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 209 agctgtaatgctctccaaaatgaggaataattaacacaggagacaaacaaacaaacaaac 268

                                                                       
Query: 61  aaacaaacgaaggactagtaagatattggacaaaatgaaagtgttgagatctagaattca 120
           |        |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 a--------aaggactagtaagatattggacaaaatgaaagtgttgagatctagaattca 320

                                                                       
Query: 121 aatgaaaaagagttttcaagttgagaaataagaagaattaactcagactacattgatagt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aatgaaaaagagttttcaagttgagaaataagaagaactaactcagactacattgatagt 380

                                                                       
Query: 181 tcatcaatagagaaccatcagtgaccagtgtacttagtaaggtaaaaggtcactatgacc 240
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcaacagagaaccatcaatgaccagtgtacttagtaaggtaaaaggtcactatgacc 440

                                                                       
Query: 241 gtgaagcaacctataggagggatgtaatgaatgttaaagaatgaggtttgatttaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gtgaagcaacctataggagggatgtaatgaatgttaaagaatgagatttgatttaagagt 500

                                                                       
Query: 301 ggatggagagaaagaccatatagataatacagataatagagaaacgatctgtctaaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatggagagaaagaccatatagataatacagataatagagaaacgatctgtctaaagtt 560

                                                                       
Query: 361 attgtagtgaggaagacagttgggagaaaacagcaggaagcttttgttcttttactttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgtagtgaggaagacagttgggagaaaacagcaggaagcttttgttcttttactttag 620

                                                                       
Query: 421 gtctgaacaaatagtagtacatatatattcttaaacatgtagactaaagtatctagatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgaacaaatagtagtacatatatattcttaaacatgtagactaaagtatctagatga 680

                                                                       
Query: 481 tacagtgcaatgcagagtcaggaaagctgttgtgatggtcttgggacatgcaagagagca 540
           ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tacagtgcagtgcagagttaggaaagctgctgtgatggtcttgggacatgcaagagagca 740

                      
Query: 541 tgttccaattg 551
           |||||||||||
Sbjct: 741 tgttccaattg 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)