Query= MSMg01no535_l06.b1 MSMg01no535_l06.b1 CHROMAT_FILE:
MSMg01no535_l06.b1 PHD_FILE: MSMg01no535_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:36 2005
(658 letters)
>mm_chr3_47309621_47310679
Length = 1059
Score = 1259 bits (651), Expect = 0.0
Identities = 654/655 (99%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 5 gaattctcttctc-aaaagcacaacaggggtcccattatgtggacttaggccttttacag 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattctcttctcaaaaagcacaacaggggtcccattatgtggacttaggccttttacag 800
Query: 64 caatgccctaggtattggataattgctcataagataaagggctacattatgaatgctaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caatgccctaggtattggataattgctcataagataaagggctacattatgaatgctaca 740
Query: 124 taaatcttttgtgtcatattttacaaattatatttttccactgtattacctttgagcacc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taaatcttttgtgtcatattttacaaattatatttttccactgtattacctttgagcacc 680
Query: 184 ctacagatgtttttgaaaacatttacctccccttatattttcagggacctaaagccataa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctacagatgtttttgaaaacatttacctccccttatattttcagggacctaaagccataa 620
Query: 244 aggcttctctgttggatttccactgcacaattctcatttaaaaatattttccaatccttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggcttctctgttggatttccactgcacaattctcatttaaaaatattttccaatccttg 560
Query: 304 ttttgatttatttcaagtcacctgtgtatcaaatgacaagccagctggttgctgaccttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttgatttatttcaagtcacctgtgtatcaaatgacaagccagctggttgctgaccttt 500
Query: 364 aaaaattcccagaactttaagagaaaaccatgggaaacctgtccaacatactgctcattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaaattcccagaactttaagagaaaaccatgggaaacctgtccaacatactgctcattt 440
Query: 424 cataataagactgtaacagttttactctccaaaatctaagtctaactgtgagaattttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cataataagactgtaacagttttactctccaaaatctaagtctaactgtgagaattttaa 380
Query: 484 tactgctatgtaaatagagcatgcattgctttgttaaggtgtgcactctatgatcacatc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tactgctatgtaaatagagcatgcattgctttgttaaggtgtgcactctatgatcacatc 320
Query: 544 aatgacttcttttatgatgattctttactatattattagtatatagttgagatagagaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatgacttcttttatgatgattctttactatattattagtatatagttgagatagagaaa 260
Query: 604 tccaaagaaagccattttaaaattctcgaggtatgaattgtgcttgactttgatt 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tccaaagaaagccattttaaaattctcgaggtatgaattgtgcttgactttgatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_l06.g1 MSMg01no535_l06.g1 CHROMAT_FILE:
MSMg01no535_l06.g1 PHD_FILE: MSMg01no535_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:36 2005
(693 letters)
>mm_chr3_47273694_47274786
Length = 1093
Score = 1340 bits (693), Expect = 0.0
Identities = 693/693 (100%)
Strand = Plus / Plus
Query: 1 ctagttttgtacctcatgaaatattatttcagccttcctggaaatcccacacgttttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagttttgtacctcatgaaatattatttcagccttcctggaaatcccacacgttttgta 260
Query: 61 aacattgagacctagtgatgtttaaacaagccacttactttcctgatacagttggcaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattgagacctagtgatgtttaaacaagccacttactttcctgatacagttggcaaac 320
Query: 121 acaaactccttaaatgactgtgaagcttattaaagacagactacctgtggagtgcctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaactccttaaatgactgtgaagcttattaaagacagactacctgtggagtgcctcaa 380
Query: 181 aatgtttgaaatactaccaagtgtttgaaatgaaaagtggttttattttctaacctcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtttgaaatactaccaagtgtttgaaatgaaaagtggttttattttctaacctcaaa 440
Query: 241 atatttagaaatgagaaaaaagggttaatatggtgaaatatttcaacgttgttaaaataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttagaaatgagaaaaaagggttaatatggtgaaatatttcaacgttgttaaaataa 500
Query: 301 tacttggctgaagaaaaaaaatctctgaaaaaccaaatatggagagtagactggtaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttggctgaagaaaaaaaatctctgaaaaaccaaatatggagagtagactggtaacaa 560
Query: 361 gataagaaaaataaacaacatggcatcgcaagtgaaaattatgttaatgtgaaatatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataagaaaaataaacaacatggcatcgcaagtgaaaattatgttaatgtgaaatatata 620
Query: 421 tgaaatttctaatgtaaaaattgaaatctaataggagaaataatttatgcatcagatata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaatttctaatgtaaaaattgaaatctaataggagaaataatttatgcatcagatata 680
Query: 481 tactcatagattgatttcctgactgcttaacctacagttcttgtgcccttagaggcactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactcatagattgatttcctgactgcttaacctacagttcttgtgcccttagaggcactt 740
Query: 541 ctgggtctgcctagttgtaaacagatgaaatagaaatatttgtactctcactggttaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgggtctgcctagttgtaaacagatgaaatagaaatatttgtactctcactggttaaaa 800
Query: 601 taagaaaatgctatatgtatattattcctttaacataaatttattttattcctaaatgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taagaaaatgctatatgtatattattcctttaacataaatttattttattcctaaatgaa 860
Query: 661 ttataaagaactaaaagtaataactctattaac 693
|||||||||||||||||||||||||||||||||
Sbjct: 861 ttataaagaactaaaagtaataactctattaac 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
