NNNGGGCAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCAAACCAACCCATGTCTGGCTGTGGTGGCAACTCAGAAATG
GCCTGGGCTACTGGTCTTTCTTTCTAGCATAGCTGGGCTCCAGAGTGCAT
GATCTCAGGAGGGTCTTATAACAGAGGGAGGGTGGCTGTCTTTTCCTCCC
TTTAGCATAGAGGAGAGGACTGTTGGCTACCTGGGCAGAGATGTAAGTTC
CATCTAAGGACATGATGCAAGAAAGCACACGAACTTGGACAAGGAGTGAT
TTTTCCTGCATTCACAGTCAGATTAAGCACTATGAAGTGCAATGAACTTT
GAAACATTATAAACAAGGTATTCACTCATTCACTCATTCATTCGTTCACT
TCAAAAAACATTTAGCAAATGTCCATTCTTTCTCAATTCCTATATTTTCT
GAGCATGTGCAGAGCACTGGAGACACAGCATCAGGGATACTTTTTGGACC
TGTGTTCATGGAACTTTTGATGTGCAGGATTGAACTCTACTGTACTGACA
TTGTATCAGCCTAAACTCATGTAGGAATTGTGGTTGAGATTTAAAAATAG
CAAGAAAGAGATACTTCCATCTCAGAGATGAAAAAAAAAAAAAAAAAGAA
CATCGCTGCAGTGTGAACATGAATGAAACACTCTTTAACTTTAAAGGTAT
CAAAAGTTAAGATTTTGCCCATTGGTAAATTGTTTGGTAGTTACTAAGTT
ACCCTTTAAAAAATTTTTTTTA

GGGGCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTACAACCCCATGGGACAAGGA
ATAGTTGAACGTGCTCATCGCATCTTAAAGAATTGGCTTTTTAAAACAAA
AGAGGGGCAGCTATATCCCCCAAGGTCACCAAAGGCCCACCTTGCCTTCA
CCTTATTTGTCCTAAATTTCTTGCACACCGATATCAAGGGCCAGTCTGCA
GCGGATTGCCACTGGCATCCAGTTACTTCTAATTCTTATGCATTGGTAAA
ATGGAAGGACCCCCTGACTAATGAATGGAAGGGTCCTGATCCAGTTCTAA
TTTGGGGTAGGGGCTCAGTTTGTGTTTTTTCACGAGATGAAGATGGAGCG
CGGTGGCTGCCAGAGAGATTAATTCGTCAGATGAACACAGATTCTGACTC
CTCTGGTAAGTATCATTCTAAAGACTAAAATTCCTTTTGTGCTTAGAATT
CAGCTGAGAGCAAAAGCTCCCAAAGCTGTTTTCCAGCTACTCTCTGAGCC
AGCTCCCGACAGGAGGCCGGAGACTAGCCTCAGCTTTACAATTTGCATTT
GAATAAAGTACCTAGACTTCCCCGAAAGAAGTTCTGCTTTCCTACTTTCT
CACTGTCTTTCAAGATTTTGTCTTTCAAGCAGGTAAATCAACACTCTCGA
AGCGGACCAGCGGATGTGCATCCCCGCCCCCCTAGAGCACACAGGTGGCT
GCTGTTATCTCCTTTCCAG

Query= MSMg01no535_o16.b1 MSMg01no535_o16.b1 CHROMAT_FILE:
MSMg01no535_o16.b1 PHD_FILE: MSMg01no535_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:52 2005
         (607 letters)



>mm_chr3_8508478_8509484
          Length = 1007

 Score = 1000 bits (517), Expect = 0.0
 Identities = 520/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccaaaccaacccatgtctggctgtggtggcaactcagaaatggcctgggctac 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 521 ggaattcccaaaccaacccatgtctggctgtggtggcagctcagaaatggcctgggctac 462

                                                                       
Query: 64  tggtctttctttctagcatagctgggctccagagtgcatgatctcaggagggtcttataa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tggtctttctttctagcatagctgggctccagagtgcatgatctcaggagggtcttataa 402

                                                                       
Query: 124 cagagggagggtggctgtcttttcctccctttagcatagaggagaggactgttggctacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cagagggagggtggctgtcttttcctccctttagcatagaggagaggactgttggctacc 342

                                                                       
Query: 184 tgggcagagatgtaagttccatctaaggacatgatgcaagaaagcacacgaacttggaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgggcagagatgtaagttccatctaaggacatgatgcaagaaagcacacgaacttggaca 282

                                                                       
Query: 244 aggagtgatttttcctgcattcacagtcagattaagcactatgaagtgcaatgaactttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aggagtgatttttcctgcattcacagtcagattaagcactatgaagtgcaatgaactttg 222

                                                                       
Query: 304 aaacattataaacaaggtattcactcattcactcattcattcgttcacttcaaaaaacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaacattataaacaaggtattcactcattcactcattcattcgttcacttcaaaaaacat 162

                                                                       
Query: 364 ttagcaaatgtccattctttctcaattcctatattttctgagcatgtgcagagcactgga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttagcaaatgtccattctttctcaattcctatattttctgagcatgtgcagagcactgga 102

                                                                       
Query: 424 gacacagcatcagggatactttttggacctgtgttcatggaacttttgatgtgcaggatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gacacagcatcagggatactttttggacctgtgttcatggaacttttgatgtgcaggatt 42

                                                    
Query: 484 gaactctactgtactgacattgtatcagcctaaactcatgt 524
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gaactctactgtactgacattgtatcagcctaaactcatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)