CAAAAATTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTCTTTTTGGCTGCATAATGCTCAACTCTTACTGCTGCATGTGTTAG
AGTGACAATTGTTAGCTATCTGCTCAGACCCGTCACACCCAGGCTGATTC
TCCCTAACAGCCCCAGTGAGGAAACATGGGCATGCGCGCGTATCTCCTGG
ATGCTGCGCCACCTTCTGTGGTTACACACACAGGAGTAAGAGAAGACCCT
ATAATAAACAGGTCTATGTTCGATTTTGTGAAGAAGCTTAGCCCATTTTT
CCATATGGAAAAATGTACTCCCTGCCAATGTCTGAAAGTGAATCCGTTCT
GGCTCTGGTCTTGATGCTTACCCTCACTCTTCACTTTTCCTCGATAATCG
CTCTAACTGGGGTTCCAGGGAACTCCACTGTGGTTCTAATGTCAACTTCC
CCAATTGCTTTGAGAAGTCTCCATTCAGATCATTTGCCCATTTATATTTG
GATTAAATGTGGTTTTGTTGTTTCTTTTTTATCACACATGTACGGTTTTA
GTTCTTCACATATTCCTGATTCTAACACGTCATCAGATAAATAGCTGGCA
CGTGGCTCCCAATGAAGCATGGTAGCTCTTTGTTCTGTCGACTGTTTCCT
TCGTGACACTTTTTATATAATCCACAAGCAAAACTACCAAATCCTCCCAG
AGTGAATGAACATATTGTTAAGGCATATTACCCCTAAAAGTTAATCAAAA
TATTTATAGATAGGCCCTTCTACAAATCAATAAGAAAG

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCATATACCTAAACACAATAAAG
GCAACATTCAGCAAACAAATAGCCAATATCAAATTAAATGGAGAGAAACT
TGAAACAATTACACTAAAGTCAGACACCAGACAAGGCTTCCCACTCATGG
TATCTATTTAACATAATACTTGAAGTTTTAACTAGAGCAATAAGACAACT
AAAGGATATAAAAGGGATATAATTAGAAAGAAAGAAGTCAAAGTATTCCT
ATTTTCAAATGATATAATAGTTATCTATAACTGACCCTAAAAATTATACC
AGAGAACTCCTACAGCTGATAAACAACTTCAGCAAAGTCACTGGATATAA
AATTGGCTCAAAGAAGTAAGTAGCCTTCATTTATACAAATAATACACAAG
CTGAGAATGAAATAAGGGAAACAAAACCTTTCACAATAGTCATGAATAAT
ATAAAAACTATCTTGGTGTAACTATAACTAAGTGAGTAAAATATATGTAT
GACAAGAACTTCAAGTCCCTAAAGAAAGAAATAGAAGTCCTGAGAAGATG
AAAAGATCCTCTATGCTCATGAATAAATAAGACTAACATAGTGAAATTAG
CCATCTTACCAAAAGCAATCTACAGATTCAATACAATTCCCATCAAAATT
CCAACACAGTTTTTACCGACATGTAAAGAGCAATTCTCAAATTCATATGG
AAAAACAAAAAACCCAAGATAGCCTAAACTATTCTGCA

Query= MSMg01no535_p02.b1 MSMg01no535_p02.b1 CHROMAT_FILE:
MSMg01no535_p02.b1 PHD_FILE: MSMg01no535_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:54 2005
         (604 letters)



>mm_chr3_26146685_26147685
          Length = 1001

 Score = 1067 bits (552), Expect = 0.0
 Identities = 587/600 (97%), Gaps = 3/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctttttggctgcataatgctcaactcttactgctgcatgtgttagagtgac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctttttgactgcataatgctcaactcttactgctgcatgtgttagagtgac 264

                                                                       
Query: 65  aattgttagctatctgctcagacccgtcacacccaggctgattctccctaacagccccag 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aattgttagctatctgctcagacctgtcacacccaggctgattctccctaacagccccag 324

                                                                       
Query: 125 tgaggaaacatgggcatgcgcgcgtatctcctggatgctgcgccaccttctgtggttaca 184
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 325 tgaggaaacatgggcatgcgcgcgtatctcctggatgctgtaccaccttctgtggttaca 384

                                                                       
Query: 185 cacacaggagtaagagaagaccctataataaacaggtctatgttcgattttgtgaagaag 244
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacgcaggagtaagagaagactctataataaacaggtctatgttcgattttgtgaagaag 444

                                                                       
Query: 245 cttagcccatttttccatatggaaaaatgtactccctgccaatgtctgaaagtgaatccg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttagcccatttttccatatggaaaaatgtactccctgccaatgtctgaaagtgaatccg 504

                                                                       
Query: 305 ttctggctctggtcttgatgcttaccctcactcttcacttttcctcgataatcgctctaa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 505 ttctggctctggtcttgatgcttaccctcactcttcacttttcctcgat---cgctctaa 561

                                                                       
Query: 365 ctggggttccagggaactccactgtggttctaatgtcaacttccccaattgctttgagaa 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctggggttccagggaattccactgtggttctaatgtcaacttccccaattgctttgagaa 621

                                                                       
Query: 425 gtctccattcagatcatttgcccatttatatttggattaaatgtggttttgttgtttctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtctccattcagatcatttgcccatttatatttggattaaatgtggttttgttgtttctt 681

                                                                       
Query: 485 ttttatcacacatgtacggttttagttcttcacatattcctgattctaacacgtcatcag 544
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 682 ttttatcacacatctacggttttagttcttcacatattcctgattctaacacttcatcag 741

                                                                       
Query: 545 ataaatagctggcacgtggctcccaatgaagcatggtagctctttgttctgtcgactgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 742 ataaatagctggcacgtggctcccaatgaagcatggtagctctttgttctgtcgattgtt 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1001
Length adjustment: 10
Effective length of query: 594
Effective length of database: 991
Effective search space:   588654
Effective search space used:   588654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)