BAC Information

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BAC

Clone NameMSMg01-535P21
Chromosome3 (Build37)
Map Location 88,697,187 - 88,697,843
singlet/doubletsinglet
Overlap genenone
Upstream geneHdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535P21.T7 (MSMg01no535_p21.b1)MSMg01-535P21.TJ (MSMg01no535_p21.g1)
ACCAG603312AG603313
length774779
length of high quality
(start - end)		649 (50 - 698)529 (81 - 609)
definitionCHROMAT_FILE: MSMg01no535_p21.b1 PHD_FILE: MSMg01no535_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:58 2005CHROMAT_FILE: MSMg01no535_p21.g1 PHD_FILE: MSMg01no535_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTGCCCATTGTGGGCGTTGGAACTGAACCCAGGTCCAGTG
TAAGAGCAGCAGAACTTTTTAACTATTGAGACATCTGTCAATCTTCCTGA
TTCATTTATTTATTTATTTATAAATCACACTTATTTACCTGGGTAGGGGC
ATACACATGTCACAGTATGCACATGAGGTCAGAGGACAACTTGAGGAAGT
CGGTTCCTCCTTGTACCAGGCTCAAGCCTACTGACTGCACCATTTATTCT
AGTTATTAGCTAGCTTGTTTGTTTGTTTGAGGCATGTCTCTCAGTGTATG
TTGTTCATTTATTTATTCACTGATTGATTGCGACTGAGTCTTTGTGGACC
TTTGTCTGTCCTGGAGCTTACTATGTAGACCAGGCTAGTATACTGACCAC
ATGGAGACCCTTTTTTCTCTGCCTCCCAAGTGCTGGCATAAAGGTATGTG
TCACCACACCTAGCCCACTTACTTTTAAAATGAAACTAACATAATCTGTC
TCTTTCTCTCTTCTTCTTCCTCCTCTATCTCCTCTTCCTCCTCCTCTTTC
CCTGGGATTATAGTCAGGTTCCATCGTGCTTGGTTCATAGTGTCTTTTCC
AGTTAACACTCTTACTTACTTAAAAGTAGTTTCTGGGGGGCAGGAGATAT
GGCTCAGCACGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAA
ATCTCAGCAACCACATGGTAGCTN

AAAACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACTGTGTAGCCCAGGCTG
GCCATGAATTTGAGATCCTCCTTTCTCTGCCTCCTTAGTTGCTGCAATTT
TAGATCCGCATCACATGCTCTTTCAAAATTTCTGGATCTTTTTATTTTTA
AGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTGT
GTCACTGTATGTGTATGTATACTGCCCTCCAATTATTTTTGAGACAGGAT
CCCTTACTGAAACCAGAGAACCAGATTGGCTAGATTTGGGTAAGTAAGCT
CTTACTTGTCAGTAAGCTCTGAGAATGTGATCACCCTGCCATCGCTGCCA
CCACCACCACTACCACTGACACCACCACCATCACCACCACCACGTTAGAG
AGTCACAGACACAAGACATGGGCATTTATGGAGGTACTGGGATTTGAACT
CAGGTTCTAGTGCTTGCACAACATGCACTTTACTAAGTGAGGCATCTTTC
ACCTTTACAGAGCATTATCATATATGGCATTGAAATGCACACTTATGTGG
GGCTGGGGAGATGGGTCAACGGGTAAGAACATTTAGTGCTCTCCCACAGG
GCCTGAGTTTGAGTTCTAGGAGGCTTATTTTACCACCTATAATTCTAGTT
CTAGCGGACTGAAAACCTTCTCTGGGGTCTCCTGGTAGTTCCTCCACACA
TTCTTGCCTAGCTACGGACAATAGATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_p21.b1 MSMg01no535_p21.b1 CHROMAT_FILE:
MSMg01no535_p21.b1 PHD_FILE: MSMg01no535_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:58 2005
         (649 letters)



>mm_chr3_88696995_88698043
          Length = 1049

 Score = 1158 bits (599), Expect = 0.0
 Identities = 637/657 (96%), Gaps = 12/657 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgcccattgtgggcgttggaactgaacccaggtccagtgtaagagcagcaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcattgcccattgtgggcgttggaactgaacccaggtccagtgtaagagcagcaga 252

                                                                       
Query: 65  actttttaactattgagacatctgtcaatcttcctgattc------------atttattt 112
           ||||||||||||||||||||||||||||||||||||||||            ||||||||
Sbjct: 253 actttttaactattgagacatctgtcaatcttcctgattcatttatttatttatttattt 312

                                                                       
Query: 113 atttatttataaatcacacttatttacctgggtaggggcatacacatgtcacagtatgca 172
           ||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||
Sbjct: 313 atttatttataaatcacacttatttacatgggcagggttatacacatgtcacagtatgca 372

                                                                       
Query: 173 catgaggtcagaggacaacttgaggaagtcggttcctccttgtaccaggctcaagcctac 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 373 catgaggtcagaggacaacttgaggaagtcggttcctccttgtaccaggctcaagcctag 432

                                                                       
Query: 233 tgactgcaccatttattctagttattagctagcttgtttgtttgtttgaggcatgtctct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgactgcaccatttattctagttattagctagcttgtttgtttgtttgaggcatgtctct 492

                                                                       
Query: 293 cagtgtatgttgttcatttatttattcactgattgattgcgactgagtctttgtggacct 352
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 493 cagtgtatgttgttcatttatttattcactgattgattgcgactgagtctctgtggacct 552

                                                                       
Query: 353 ttgtctgtcctggagcttactatgtagaccaggctagtatactgaccacatggagaccct 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttgtctgtcctggagcttactatgtagaccaggctagtatactgaccacatggagaccct 612

                                                                       
Query: 413 tttttctctgcctcccaagtgctggcataaaggtatgtgtcaccacacctagcccactta 472
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 613 tttttctctgcctcccaagtgctggcataaaagtatgtgtcaccacacctagcccactta 672

                                                                       
Query: 473 cttttaaaatgaaactaacataatctgtctctttctctcttcttcttcctcctctatctc 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cttttaaaatgaaactaacataatctgtctctttctctcttcttcttcctcctctatctc 732

                                                                       
Query: 533 ctcttcctcctcctctttccctgggattatagtcaggttccatcgtgcttggttcatagt 592
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 733 ctcttcctcctcctctttccctgggattatagtcaggttccatcgtgtttggttcatagt 792

                                                                    
Query: 593 gtcttttccagttaacactcttacttacttaaaagtagtttctggggggcaggagat 649
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gtcttttccagttaacactcttacttacttaaaagtagtttctggggggcaggagat 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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