Query= MSMg01no536_a06.b1 MSMg01no536_a06.b1 CHROMAT_FILE:
MSMg01no536_a06.b1 PHD_FILE: MSMg01no536_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:00 2005
(461 letters)
>mm_chr3_53996187_53997046
Length = 860
Score = 806 bits (417), Expect = 0.0
Identities = 447/457 (97%), Gaps = 1/457 (0%)
Strand = Plus / Minus
Query: 5 gaattctccaatgtctaggtatatgaattaataattaagatcattatttcataatctgca 64
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 660 gaattctccaatgtctaggtatgtgaattaataattaagaccattatttcataatctgca 601
Query: 65 gcttttcagtgtgttgtaattgacattttcttcaggtgtcttcatagactagttagactt 124
||| ||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct: 600 gctcttcagtgtgttgtaaatgacattttcttcaggtgccttcataggttagttagactt 541
Query: 125 gagtatgtcacatctattaatattagacacacaaattagttaagtaaagtcggagtataa 184
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 540 gagtatgtcacatctattaatattaaacacacaaactagttaagtaaagtcggagtataa 481
Query: 185 tttaattattctgaggatttttttttttactcattttggaagagaagaatcatttctgtt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttaattattctgagga-ttttttttttactcattttggaagagaagaatcatttctgtt 422
Query: 245 acgtaagggcaaggacgctttaatattctttgagtataatgaaaacattgacaaatcaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acgtaagggcaaggacgctttaatattctttgagtataatgaaaacattgacaaatcaaa 362
Query: 305 gttctgatgatactactatcttttaaggatctgagcttgaatccccatttaagcactatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttctgatgatactactatcttttaaggatctgagcttgaatccccatttaagcactatt 302
Query: 365 actacaagttactataagtaactatgaacataagttactattaaaatattgtcttttaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actacaagttactataagtaactatgaacataagttactattaaaatattgtcttttaag 242
Query: 425 gaggaggtaagaaatttctgcagggcttgaagttagc 461
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggaggtaagaaatttctgcagggcttgaagttagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space: 383350
Effective search space used: 383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_a06.g1 MSMg01no536_a06.g1 CHROMAT_FILE:
MSMg01no536_a06.g1 PHD_FILE: MSMg01no536_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:00 2005
(547 letters)
>mm_chr3_53866635_53867581
Length = 947
Score = 942 bits (487), Expect = 0.0
Identities = 529/543 (97%)
Strand = Plus / Plus
Query: 1 acaaaatgagtcataccctctggtaacagtaaacacactacctcatgtttacggtttctg 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 201 acaaaatgagtcataccctctggtaacagtgaacacactacctcatgtttacagtttctg 260
Query: 61 acatgcaaggacataatcattattattttaaaaatgcttgtcttaagtttggagctgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgcaaggacataatcattattattttaaaaatgcttgtcttaagtttggagctgaga 320
Query: 121 tgaaaggatggaccatctagagactgccacacccggggatccatcccataatcagcctcc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgaaaggatggaccatctagagactgccacacccagggatccatcccataatcagcctcc 380
Query: 181 aaacacagacaccattgcatacgccagccagattttgctgaaaggaccctgataaagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacacagacaccattgcatacgccagccagattttgctgaaaggaccctgataaagctg 440
Query: 241 tctcttgtgaggctatgccggtgcctggcaaacacagaagtggatgctcacagtcagcta 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttatgaggctatgccggtgcctggcaaacacagaagtggatgctcacagtcagcta 500
Query: 301 ttggatggatcacagggtccccaatggagaagctagagaaagtatccaagaagctaaagg 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ttggatggatcacagggtccccaatggagaagctagagaaagtatccaaggagctaaagg 560
Query: 361 ggtctgcaatcctataggtggaacaacaatatgaactaaccagtacccccagagctcgtg 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ggtctgcaaccctataggtggaacaacaatatgaactaaccagtacccccagagctcatg 620
Query: 421 tctctagttgcatatgtagcagaagatggcctagtcggccatcattgggaagagaggccc 480
|||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 621 tctctagttgcaaatgtagcagaagatggcctagttggccatcattgggaagacaggccc 680
Query: 481 cttggtcttgcaaaccttatatgcctcagtataggggaaagccagggccaagaagtggga 540
||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 681 cttggtcttgcaaacattatatgcttcagtacaggggaaagccagagccaagaagtggga 740
Query: 541 gtg 543
|||
Sbjct: 741 gtg 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
