Query= MSMg01no536_c23.b1 MSMg01no536_c23.b1 CHROMAT_FILE:
MSMg01no536_c23.b1 PHD_FILE: MSMg01no536_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:13 2005
(566 letters)
>mm_chr3_139669794_139670763
Length = 970
Score = 1056 bits (546), Expect = 0.0
Identities = 563/570 (98%), Gaps = 4/570 (0%)
Strand = Plus / Plus
Query: 1 gcaatgcaatgtcaaaattcttgtgatcattctgtgaatatatgtctcaactctaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatgcaatgtcaaaattcttgtgatcattctgtgaatatatgtctcaactctaaaatg 260
Query: 61 ctggtgtctgtctctgacatggattttactagatggttatcctgaagtcagtatatatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgtctgtctctgacatggattttactagatggttatcctgaagtcagtatatatct 320
Query: 121 tggcttcataaatggagataaacaatcccagagtaaaaagaaaaaaaa-tccttcaaagg 179
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 321 tggcttcataaatggagataaacaatcccagagcaaaaagaaaaaaaaatccttcaaagg 380
Query: 180 ccccaaattctaagtaaaatttgatgctttttttttt---caaaatcaagggctttcttc 236
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ccccaaattctaagtaaaatttgatgctttttttttttttcaaaatcaagggctttcttc 440
Query: 237 aaagtcttctgaagggaaattaattggaattaaaggctataaaatatcttatgctgaaga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtcttctgaagggaaattaattggaattaaaggctataaaatatcttatgctgaaga 500
Query: 297 atggaagacaaacataaatatacaaaataaatagctaagagccacttgaaataatgatga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggaagacaaacataaatatacaaaataaatagctaagagccacttgaaataatgatga 560
Query: 357 atattctatcttgatatggagattcctgtcgtccctctcttgtttctcaaacccatactc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattctatcttgatatggagattcctgtcgtccctctcttgtttctcaaacccatactc 620
Query: 417 ttctaccaaccttagatatttattttccctatttctaaagggacttcagaaacaaccaca 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctaccaaccttggatatttattttccctatttctaaagggacttcagaaacaaccaca 680
Query: 477 tgagtatatttaaatgtaagaaggtggcatactaatatgacattaatattaccttagatc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagtatatttaaatgtaagaaggtggcatactaatatgacattaatattaccttagatc 740
Query: 537 ttttaaagcagagtacaatattttgaaagt 566
|||||| |||||||||||||||||||||||
Sbjct: 741 ttttaaggcagagtacaatattttgaaagt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 970
Length adjustment: 10
Effective length of query: 556
Effective length of database: 960
Effective search space: 533760
Effective search space used: 533760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_c23.g1 MSMg01no536_c23.g1 CHROMAT_FILE:
MSMg01no536_c23.g1 PHD_FILE: MSMg01no536_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:13 2005
(538 letters)
>mm_chr3_139854498_139855434
Length = 937
Score = 1017 bits (526), Expect = 0.0
Identities = 535/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 1 tacacaagctggaaaatataacatattgcatgatttaaaaatgaaagtggattctgaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tacacaagctggaaaatataacatattgcatgatttaaaaatgaaagtggattctgaagg 678
Query: 61 gaacaaaaaaaaagatttctgactagataggaaacaaaagaatcattacacagacccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaacaaaaaaaaagatttctgactagataggaaacaaaagaatcattacacagacccttg 618
Query: 121 agtaattgaaaagatgaggtgtataactcaagaagagagcagaaatttaaatgcaatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agtaattgaaaagatgaggtgtataactcaagaagagagcagaaatttaaatgcaatgta 558
Query: 181 aagctgagaatgcaagggaagattttaaattagaatttgaagacaagctagttcttcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagctgagaatgcaagggaagattttaaattagaatttgaagacaagctagttcttcctg 498
Query: 241 gggcctgaaataagaagaatgtcagcattgaaaactctgaaattaaatatagtgaaaagt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggacctgaaataagaagaatgtcagcattgaaaactctgaaattaaatatagtgaaaagt 438
Query: 301 cacaaattaaatactgaaacagaggttaaattcagtgactaatagtatttaataattcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cacaaattaaatactgaaacagaggttaaattcagtgactaatagtatttaataattcca 378
Query: 361 ctgagacactgtactttaacactaggttatctttaattgttttaactaaatttaatttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgagacactgtactttaacactaggttatctttaattgttttaactaaatttaatttct 318
Query: 421 gcttggatgaaaaaaaacagtcataaaattattgaatttaaagactataatctatctctt 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcttggatg-aaaaaaacagtcataaaattattgaatttaaagactataatctatctctt 259
Query: 481 cattggtctccttataaatgggatgatcacagaggtattgaatgaggtatgtgaggtg 538
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 cattggtctccttataaatgggataatcacagaggtattgaatgaggtatgtgaggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space: 489456
Effective search space used: 489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
