BAC Information

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BAC

Clone NameMSMg01-536E19
Chromosome3 (Build37)
Map Location 76,469,198 - 76,469,748
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneGolph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536E19.T7 (MSMg01no536_e19.b1)MSMg01-536E19.TJ (MSMg01no536_e19.g1)
ACCAG603546AG603547
length756757
length of high quality
(start - end)
555 (47 - 601)406 (172 - 577)
definitionCHROMAT_FILE: MSMg01no536_e19.b1 PHD_FILE: MSMg01no536_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:22 2005CHROMAT_FILE: MSMg01no536_e19.g1 PHD_FILE: MSMg01no536_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCTCCTCCCAAGGATAATACAGCCTGTGCCCGATACTCTCAT
TTTTATCCAACAAAATATGTCATTCCTGGAGAATAGGCTCCTCCTTTGTC
TTAATGAACTTCTCATTCTTTTTTAAAAGAAATCAGGGGACTATGTGATC
CTTCAGCCTGGGCCTGTGGCTATTACCAATGCCCTACAACATTTGATTCT
CATCTGTTTTCTTAAATTCTTAAGCTCTGGTGTGAGGACCAAGCTTGTGT
CTCCACTCTTCCTTCATGAAGAAGTTGTGTTTGATTCAGTTTTCTGGCAC
ATAGATGAGCATGTAGGATGCTTCTACTTCTGATGTTCTCCTACAACCCA
ATGTGCTGATGCAAGTGCATAAATGCTTCCTGATAACCTTTAAACTTCAA
TAACTCAAATTTTGATTTGGTTTATTTAGTCTCTGGCTGTGAAGGAAAAT
TGAAAATACATTTAAAGGGCATGGATATCACAGAGATGACCTTCAAGTGT
TCACTGAAAACATTCTCAGAGGCTAGGGAGGACATTAATGGGTTAAGAAC
TCTTGGAGAGTACCCAAGGTCATTTCCAGCATTCATGTGGTAGGTCATTA
ACCACCCATATCTCCAGTTACAGGGCATCTGATTCTCACTCCTGACCAAT
GTGGACACTAGCCATGCATGTTGTGTACATACATTAAACAAATCTAAAAG
AACTTN
CCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTTTTTATCCAGCTTTCTCAATAA
AAAACAAAACAAAACAAAACAAAACACACATAATAAAAAAAAAAAAAAAC
AGACAGGTTGATCAACAGAAATCAAATACAAGAGTCAGAGGTAAATCTAC
GCACCCATGAACACTTGATTTTTGACAAAGAAGTAAAAACTATACAATGG
AGAAAAGAGAATATCACCAACAAGTTGTGCTGTTTTAAGTGGATGTCCAG
CTGTATGATAACACAAATACTTCCTTATCTATCACCTTGCAGAAAAATGG
AGTCTAAGTGAACCAAAGGTTTCAACATAAAATCAGATACATTAAATCTG
GTAGACAAGAAAGTGGGGAAGAGCCTTGATTCATTGTCACAGAAGACAAC
TTCCTGAAGAAAATACAAATAACTCAAGATCTAAGATCAATAATGGGACC
TCATAAAACCGAACAGATTCTGTAAGGCAAAGAACACCTTCTNAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAACCAAACTACGGGCTACAGTATGGGAA
AAGATTTTTACCAACTCCACGTCTGACAGAGGACTGACACCCAAAGAATA
TATTAAGAACTCAAGAAAATAGACNTCAATAAACCAAATAACACAATTAA
ACAATGGGATATACATCTAAGCAGAGAATTCTCNACTGAGGAACCTCTAA
TGGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_e19.b1 MSMg01no536_e19.b1 CHROMAT_FILE:
MSMg01no536_e19.b1 PHD_FILE: MSMg01no536_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:22 2005
         (555 letters)



>mm_chr3_76468994_76469948
          Length = 955

 Score = 1019 bits (527), Expect = 0.0
 Identities = 545/551 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatctcctcccaaggataatacagcctgtgcccgatactctcatttttatccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatctcctcccaaggataatacagcctgtgcccgatactctcatttttatccaa 264

                                                                       
Query: 65  caaaatatgtcattcctggagaataggctcctcctttgtcttaatgaacttctcattctt 124
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaatatgtaattcctggagaatatgctcctcctttgtcttaatgaacttctcattctt 324

                                                                       
Query: 125 ttttaaaagaaatcaggggactatgtgatccttcagcctgggcctgtggctattaccaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttaaaagaaatcaggggactatgtgatccttcagcctgggcctgtggctattaccaat 384

                                                                       
Query: 185 gccctacaacatttgattctcatctgttttcttaaattcttaagctctggtgtgaggacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccctacaacatttgattctcatctgttttcttaaattcttaagctctggtgtgaggacc 444

                                                                       
Query: 245 aagcttgtgtctccactcttccttcatgaagaagttgtgtttgattcagttttctggcac 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcttgtgtctccattcttccttcatgaagaagttgtgtttgattcagttttctggcac 504

                                                                       
Query: 305 atagatgagcatgtaggatgcttctacttctgatgttctcctacaacccaatgtgctgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagatgagcatgtaggatgcttctacttctgatgttctcctacaacccaatgtgctgat 564

                                                                       
Query: 365 gcaagtgcataaatgcttcctgataacctttaaacttcaataactcaaattttgatttgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 565 gcaagtgcataaatgcttcctgataacctttaaacttcaataactcaaaatttgagttgg 624

                                                                       
Query: 425 tttatttagtctctggctgtgaaggaaaattgaaaatacatttaaagggcatggatatca 484
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttatttagtctctggctgcgaaggaaaattgaaaatacatttaaagggcatggatatca 684

                                                                       
Query: 485 cagagatgaccttcaagtgttcactgaaaacattctcagaggctagggaggacattaatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagagatgaccttcaagtgttcactgaaaacattctcagaggctagggaggacattaatg 744

                      
Query: 545 ggttaagaact 555
           |||||||||||
Sbjct: 745 ggttaagaact 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)