Query= MSMg01no536_e21.b1 MSMg01no536_e21.b1 CHROMAT_FILE:
MSMg01no536_e21.b1 PHD_FILE: MSMg01no536_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:22 2005
(563 letters)
>mm_chr3_154418555_154419519
Length = 965
Score = 1017 bits (526), Expect = 0.0
Identities = 556/566 (98%), Gaps = 4/566 (0%)
Strand = Plus / Minus
Query: 1 ttccatgctgtttctttggcttacctatctgtcaaaagagatatggaatcaaaggtatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttccatgctgtttctttggcttacctatctgtcaaaagagatatggaatcaaaggtatca 706
Query: 61 gagggattaaatgaagtactgtatacagagcatgctgggcttccctgtgctaacaagtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gagggattaaatgaagtactgtatacagagcatgctgggcttccctgtgctaacaagtgc 646
Query: 121 ttctgtggacttgatagcagtatctactgctgcaggacagggtcaatagtaagcattttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttctgtggacttgatagcagtatctactgctgcaggacagggtcaatagtaagcattttg 586
Query: 181 catattttgtcacccacacccaagccagcattgtttaccaaatgtaaagtcaattacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 catattttgtcacccacacccaagccagcattgtttaccaaatgtaaagtcaattacatt 526
Query: 241 tggttttactgtctgacaattctgtcttccttactgctggccatctgaagg-ctggtgcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 525 tggttttactgtctgacaattctgtcttccttactgctggccatctgaaggcct-gtgcc 467
Query: 300 tctaacatcataacgcccatgacgatacatcaccttgtggttaactcagtcaataatatg 359
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tctaacatcctaacacccataacgatacatcaccttgtggttaactcagtcaataatatg 407
Query: 360 agactgagatctgctttctggatcaatctacagtctggccctctacttctgtgcctgccc 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 406 agactgagatctgctttctggatcaatctccagtctggccctctacttctgtgcctgccc 347
Query: 420 ccctttt-tttcttcctcttccctaccctctaacatcatgatccaaggactatgctttga 478
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cccctttctttcttcctcttccctaccctctaacatcatgatccaaggactatgctttga 287
Query: 479 aggaaaaaaaa-gagctattataccatctctaactattgactagtttaagataagtttct 537
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 286 aggaaaaaaaaagagctattataccatctctaactcttgactagtttaagataagtttct 227
Query: 538 gagaggtagctaatggtttgggaaga 563
||||||||||||||||||||||||||
Sbjct: 226 gagaggtagctaatggtttgggaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 965
Length adjustment: 10
Effective length of query: 553
Effective length of database: 955
Effective search space: 528115
Effective search space used: 528115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_e21.g1 MSMg01no536_e21.g1 CHROMAT_FILE:
MSMg01no536_e21.g1 PHD_FILE: MSMg01no536_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:22 2005
(634 letters)
>mm_chr3_154253413_154254446
Length = 1034
Score = 1195 bits (618), Expect = 0.0
Identities = 630/634 (99%)
Strand = Plus / Plus
Query: 1 tgagaaggagggaatgggcaggagtgctaacagacagtcccagcaatcttgttcatgtca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tgagaaggagggaatgggcaggagtgctaacagacagtcccagcgatcttgttcatgtca 260
Query: 61 gactcacagaactgtgtcaagagagtctctgtactgtgtggaagcatcacctgtcaataa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttacagaactgtgtcaagagagtctctgtactgtgtggaagcatcacctgtcaataa 320
Query: 121 aaagctgatggccagtaagctgatgcagggttagagggtggggcatccggacacagagag 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aaagctgatggccagtaagctgatgcagggttagagggtggggcatccagacacagagag 380
Query: 181 gggaatgctgggagatagtcaggcgggaagacaccacctggactctaggaagttggacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatgctgggagatagtcaggcgggaagacaccacctggactctaggaagttggacac 440
Query: 241 aggaagctgaggagtggtaacgagtcatataacagaacttagaccagcttaaacaggata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaagctgaggagtggtaacgagtcatataacagaacttagaccagcttaaacaggata 500
Query: 301 aatgaattgggaacaagcccaaacttatggcctaggcatttactcctgaataatcctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgaattgggaacaagcccaaacttatggcctaggcatttactcctgaataatcctcag 560
Query: 361 agtccttatttgggaactggggcacaggtagaaaagacagcagttacagaactgttcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtccttatttgggaactggggcacaggtagaaaagacagcagttacagaactgttcctg 620
Query: 421 ccaatggcaccttaccagcatggtcttccctcgctttcccacggtgatgccagagttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaatggcaccttaccagcatggtcttccctcgctttcccacggtgatgccagagttcct 680
Query: 481 gaagccagaatcaattgccactgagtgctgtaagaaaacatagcaccctaggttgtggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagccagaatcaattgccactgagtgctgtaagaaaacatagcaccctaggttgtggtg 740
Query: 541 tgccaacaagccagaccctcagctgagtcccatcggtggcagaaacagataactacaaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 tgccaacaagccagaccctcagctgagtcccatcggtggcagaaacagataactataaac 800
Query: 601 ccactgatgtgctgggctgtgtggactgcgcttc 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 ccactgatgtgctgggctgtgtggactgcgcttc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
