NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAAGAACTAATAAAAAGTGTAAGATTTAATCATCTCCAACC
CAAAAACTTTATATCAATGTATTTGGTACCAATACTGTATTTAATTTCCA
TCCTTCATGAAGCATAGTGAATATTTAAAGAGAATAGTTTAGGAAAAATA
ACTCAGAGTTAGTTTCCTACAACGTGACACTCTAAGATTAAGGTAGAATT
ATTAGCATGTCCCATTAAAATCTCTTGTTAATGGAGTTAAAATAAAAGAC
AGCACATATATCTTGAAAATCTGGGCAGGGGGGAGAAAGTAGTAATTATT
AGAATATATACACTAAATCATTATCCTGCTCCATTATTTATGCATTTATA
GTGTCTTTCTCTACTACATAATTAATTTGTGATAAACACAAAAGATTCTG
ATTGCTTATATAATAAAAATTTAGATGCAGTTCACAACTAATTTTAAAGG
AAGGAAAAAAACTTAAATTTTATTGCCACATACCTTCCCAATTCATTAAT
GGCAGAGGGGTTAAACTTCTAAATGCATGGTGGTCGTCTTGTTAACACAT
GATTGATTGGCATGCTTCCGACAAGTTTATTCCTTCTGATGCCAGACACC
AAGCTTGTAAACATAAGGTAATGCTGGGCAAACACAGAACATTGACAGGA
AGTTTCTATGACAGCTTTCTTCTCCTAGCTTTAAAAGATACTTTCATTTG
ATAAGCATAAGTGTTTGCTTACTTTTGATCTACTAGCACGTTAAAGCTCT
G

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAAAGTTTGCTCACATATT
TAAGGTCTCATGAATACTCTTCCCCAAACTTTCCAGCCTTTGCCCACTGT
CTTTTCTAAAGCCTCTGAGTACTTTTAGTTATTTGTTACTCTAGCTCTCA
TTTGCAGCTACCAAAGTACCAAAATATATAGCCATCGCTACGCAAAAATG
ATTGCAGGCCTTAGTAGCTGAAGTTAAGAAGCACCTATCTGTTCACCATT
TTTGTGGGTCACAAATTGAGACTAACTAGGCTGAGTAGTTTTGGCTTGAA
ATCACACTGGCTAAAACAAAAATTTGGGATGAAGTCAACTAAAGATTTGA
CTAATGGCTTCCAAGATGGCTCACTTACAAGAGTATTGGCAGGAAGCCTC
AATTTGTCACTGGCTTCTGGCTGGAGTCGTCAGTTCCTCACCATGGGTCT
TACTGGCAAGGCTGCTTTTGAGGTTCGTGGCAGCTGACTTCTCACCAAGC
AAGTGATTCAAAACAGGAGAAAATTGTAGCTTCAGTTTATCTTCTGACCT
AGCCTGAAGCCCTACATTGGCAATTGCACAGTCCCACCCTGGACCACCCT
TGTTCAGGATGGGAGGCAACTGCATCAGGGCATGCAGTTCCAGAAGTTTA
AAGGTGGCTGTCTTAGTGGCTCACTACTGCCNAGCTCACATTCATTGCAG
ATGTCTTAATACTAAGGTTTTCCTGATTGGTCCGAACATCAANAAGTCCT
TGGTGCTCCCGCTTGAG

Query= MSMg01no536_g18.b1 MSMg01no536_g18.b1 CHROMAT_FILE:
MSMg01no536_g18.b1 PHD_FILE: MSMg01no536_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:31 2005
         (612 letters)



>mm_chr3_56376001_56377012
          Length = 1012

 Score = 1127 bits (583), Expect = 0.0
 Identities = 601/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattctcaaagaactaataaaaagtgtaagatttaatcatctccaacccaaaaactttat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 aattctcaaagaactaataaaaagtgtaagatttaatcatctccaacccaaaaactttat 753

                                                                       
Query: 66  atcaatgtatttggtaccaatactgtatttaatttccatccttcatgaagcatagtgaat 125
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atcaatgtattttgtaccaatactgtatttaatttccatccttcatgaagcatagtgaat 693

                                                                       
Query: 126 atttaaagagaatagtttaggaaaaataactcagagttagtttcctacaacgtgacactc 185
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 692 atttaaagaggatagtttaggaaaaataactcagagttagtttcctgcaacgtgacactc 633

                                                                       
Query: 186 taagattaaggtagaattattagcatgtcccattaaaatctcttgttaatggagttaaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taagattaaggtagaattattagcatgtcccattaaaatctcttgttaatggagttaaaa 573

                                                                       
Query: 246 taaaagacagcacatatatcttgaaaatctgggcaggggggagaaagtagtaattattag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 taaaagacagcacatatatcttgaaaatctgggcaggggggagaaagtagtaattattag 513

                                                                       
Query: 306 aatatatacactaaatcattatcctgctccattatttatgcatttatagtgtctttctct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aatatatacactaaatcattatcctgctccattatttatgcatttatagtgtctttctct 453

                                                                       
Query: 366 actacataattaatttgtgataaacacaaaagattctgattgcttatataataaaaattt 425
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 452 actacataatcaatttgtgataaacacaaaagattctgatggcttatataataaaaattt 393

                                                                       
Query: 426 agatgcagttcacaactaattttaaaggaaggaaaaaaacttaaattttattgccacata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agatgcagttcacaactaattttaaaggaaggaaaaaaacttaaattttattgccacata 333

                                                                       
Query: 486 ccttcccaattcattaatggcagaggggttaaacttctaaatgcatggtggtcgtcttgt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 332 ccttcccaattcattaatggcagaggggttaaacttctaaatgcatggtggtcatcttgt 273

                                                                       
Query: 546 taacacatgattgattggcatgcttccgacaagtttattccttctgatgccagacaccaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taacacatgattgattggcatgcttccgacaagtttattccttctgatgccagacaccaa 213

                  
Query: 606 gcttgta 612
           |||||||
Sbjct: 212 gcttgta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)