NTTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCCCAAATTCCAGAAGTTAGAATTAACTTTACCAGCGCCT
TATTGTACACTAGGAGAGTTTTAAATTTAACTATTAGAGCTGATATCATT
TATTTATTATTATGGGCATTGGTAATTTGCCTGCATGTATGTTGTGTGAG
GACACCAGATTTTCTGACAGACAGTTGTAAGTTGGCATGCGGTTGCTGGG
AATAGAACTGTGTCCTCTGAAAAAGTAGCCAGTAGTGCTCTTAACTGCTG
AGCCATTTCTCTAGACCCCTGTCAGTAAAATTTCTAGCCAGTGTGTTTAG
AGCTTTGGTGTTTAAATTTTGTAAGGTTTATAATGTTTGATTTTCAGAAG
AGTGTAAACTCATTTTGATTAACCTATAGGTCAGTTTTATTACTATAAAA
GTAAAATGATATTAAATAGGAGTCTTATTCTCTGAGTATTTTTTCTCATG
CTTTTAAGGGGTGTAGGTGCTGGCTGTAATACTAAAGAAGTTATCGATAG
ATTAAGGTGTCTTAAAGCTGAAATTGAAGATCTCGAATTGAAGGAAAGAG
AACTTGACCAGCAGAAGTTGTGGCTACAGCAAAGCATCAAAAATGTGATG
GAAGACTCCATTAATAACAGATATCCTTCTGAGTAAGGTATATATATATA
TAAGATGCCTACCTATATATACAGTGCTTTCTTTAGTCTCAAGTGAGTTA
CCTGCTTATGGAGTTTAGTTTTACACATGATATAGCAGTTTTATATTGCC
TA

NNNCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATA
ATAAAAGCTAGATACAGCAAACTAGTAGCCAATATCAAACTAAATGGAGA
GAAACTGAAAGCAATCCCACTAAAATCAGGAACTAGACAAGGCTGCCCAC
TTTCTCCCTACCTATTCAATATAGTACTTGAATTCCTAGCAAGAGATTTG
ATAACAAAAGGTGATTAAGGGGATAAAAATTGGAAAGGAAGAAGTCAAAA
TATCACTGTTTTCAGATATGATAGTATATGAAAGACTCCGAAAGGAGCCC
CTCCCTCAGGCCTCAGGACAATAGCGGACACCCAAAAACTCATGATAGAC
CAAGCTTGTTGCAAACCACATGAGGCTTTATTCGGGGAAAGCCAGAGCTC
TGGGGACGACTCACATCCCAAGCAGGGGTAGAGGAGTCGACCTCAAGGGG
AAAGGGGTGCCAGTTTTTATAGGCCCTCACGGGGGAAAGGAGAAGGGGAA
AAGTAGGGGATTTCCAGATCTAAACAATGTCTATTCTCAAGAAATGGGTA
TGGGAGGGGTACAAGGAAAGAGTCTGGTGCAGGTGTAGCAACCCAGGATT
GGCCGGGCTGTGGGTGCTGGGGAGATTTCTGACTCTTTCTCAGCACCAAT
ATCACAAACACTGGCAAGGGGCTTCTCAGTTGGCACACCATGGGTCAAGA
AACGGCAAAACATGGGCGACACCAGGTTCAAGAATGGCCAGAGAATGTGG
CACTCCG

Query= MSMg01no536_i20.b1 MSMg01no536_i20.b1 CHROMAT_FILE:
MSMg01no536_i20.b1 PHD_FILE: MSMg01no536_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:41 2005
         (520 letters)



>mm_chr3_14587481_14588400
          Length = 920

 Score =  911 bits (471), Expect = 0.0
 Identities = 504/517 (97%), Gaps = 5/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcccaaattccagaagttagaattaactttaccagcgccttattgtacactag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctgcccaaataccagaagttagaattaactttaccagcgccttattgtacactag 267

                                                                       
Query: 65  gagagttttaaatttaactattagagctgatatcatttatttattattatgggcattggt 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 268 gagagttttaaatttaactattagagctgatatgatttatttattattatgggcattggt 327

                                                                       
Query: 125 aatttgcctgcatgtatgttgtgtgaggacaccagattttctgacagacagttgtaagtt 184
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 328 attttgcctgcatgtatgttgtgtgagggcaccagattttctgacagacagttgtaagtt 387

                                                                       
Query: 185 ggcatgcggttg-ctgggaatagaactgtgtcctctgaaaaagtagccagtagtgctctt 243
           |  |    |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtaa----gttgtctgggaatagaactgtgtcctctgaaaaagtagccagtagtgctctt 443

                                                                       
Query: 244 aactgctgagccatttctctagacccctgtcagtaaaatttctagccagtgtgtttagag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aactgctgagccatttctctagacccctgtcagtaaaatttctagccagtgtgtttagag 503

                                                                       
Query: 304 ctttggtgtttaaattttgtaaggtttataatgtttgattttcagaagagtgtaaactca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 ctttggtgtttaaattttgtaaggtttataatgtttgattttcagaagattgtaaactca 563

                                                                       
Query: 364 ttttgattaacctataggtcagttttattactataaaagtaaaatgatattaaataggag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttgattaacctataggtcagttttattactataaaagtaaaatgatattaaataggag 623

                                                                       
Query: 424 tcttattctctgagtattttttctcatgcttttaaggggtgtaggtgctggctgtaatac 483
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcttattctgtgagtattttttctcatgcttttaaggggtgtaggtgctggctgtaatac 683

                                                
Query: 484 taaagaagttatcgatagattaaggtgtcttaaagct 520
           |||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaagaagttatcgatagattaaggtgtcttaaagct 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)