Query= MSMg01no536_j19.b1 MSMg01no536_j19.b1 CHROMAT_FILE:
MSMg01no536_j19.b1 PHD_FILE: MSMg01no536_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:46 2005
(556 letters)
>mm_chr3_146898932_146899887
Length = 956
Score = 1006 bits (520), Expect = 0.0
Identities = 544/552 (98%)
Strand = Plus / Minus
Query: 5 gaattctgtgatgattatggtagcattcactctttcttctgaaaggccagtgtctgctgg 64
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaattctgtgatgaagatggcagcattcactctttcttctgaaaggccagtgtctgctgg 579
Query: 65 atccacctgattatataagggaactttgaggggatgtctgcccagccccatgtttatggg 124
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atccacctgattagataagggaactttgaggggatgtctgcccagccccatgtttatggc 519
Query: 125 ggagcaggaagtgagaaggtcacagagaccttggttccaaatctacttgtttagcttaaa 184
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 518 ggagcaggaagtgagaaggtcacagagaccttggttccaaatctgcttgcttagcttaaa 459
Query: 185 gtgctcaacacatccaagtggaacacacattggaatatgtctctttgagccctgacattg 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtgctcaacacatccaagtggaatacacattggaatatgtctctttgagccctgacattg 399
Query: 245 cccagtgtttagtcctgggcaccagtctctagctacagggcctcctcagatcatcacagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cccagtgtttagtcctgggcaccagtctctagctacagggcctcctcagatcatcacagc 339
Query: 305 atccccccagagatcatgtcttcatagacactgctactgtcctttgctctttcctacatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atccccccagagatcatgtcttcatagacactgctactgtcctttgctctttcctacatt 279
Query: 365 accttgggctctacttggcaaccacttccttgttgctgtaaacttctatgtaagaatatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 accttgggctctacttggcaaccacttccttgttgctgtaaacttctatgtaagaatatg 219
Query: 425 tatttacttgatataatggaggagctagagaaagtacccaaggatctgaaggggtctgca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tatttacttgatataatggaggagctagagaaagtacccaaggatctgaaggggtctgca 159
Query: 485 acccgataggtggaacaacaatatgaactaaccagtacccctagagctcctgtctctagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 acccgataggtggaacaacaatatgaactaaccagtacccctagagctcctgtctctagc 99
Query: 545 tgcatatgtagc 556
||||||||||||
Sbjct: 98 tgcatatgtagc 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_j19.g1 MSMg01no536_j19.g1 CHROMAT_FILE:
MSMg01no536_j19.g1 PHD_FILE: MSMg01no536_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:46 2005
(468 letters)
>mm_chr3_146726968_146727831
Length = 864
Score = 828 bits (428), Expect = 0.0
Identities = 452/468 (96%), Gaps = 14/468 (2%)
Strand = Plus / Plus
Query: 1 cttccaatcaaaatgctatggattactccctgctgtgagctaatagggtgctaattagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccaatcaaaatgctatggattactccctgctgtgagctaatagggtgctaattagca 260
Query: 61 tatttcatttatttacttaactgggataaaaaccattgggcacgtggcccacttagaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttcatttatttacttaactgggataaaaaccattgggcacgtggcccacttagaatg 320
Query: 121 gtttccctgggggaagccaggagatgctctgagcaccaactccctgtgcattgcaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttccctgggggaagccaggagatgctctgagcaccaactccctgtgcattgcaggaag 380
Query: 181 ccagttcacaaacgcaggatgtccgcccactcacttctcttctctccttcacacctctct 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ccagttcacaaacgcaggatgtccgcccact----tctcttctctccttcacacctctct 436
Query: 241 ttcctaaacacacacacacacacacacacacacacacacacacacacacacacacacaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttcctaaacacacacacacacacacacacacacacacacacacacacacacacacacac- 495
Query: 301 cacacacacgaggctagagtctattctggtcttgcttcaataagaagctaaaatgaaaag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ---------gaggctagagtctattctggtcttgcttcaataagaagctaaaatgaaaag 546
Query: 361 tgaaactggcctgctgtttcctggtgtttgtccacattgatgctttattgacagctgtct 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 547 tgaaactggcctgctgtttcctggtgttcgtccacattgatgctttattgacagctgtct 606
Query: 421 ggacccctctggacttgcctctacaacttgtaataatgactgtaggtc 468
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 607 ggacccctctggacttgcctctataacttgtaataatgactgtaggtc 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 864
Length adjustment: 10
Effective length of query: 458
Effective length of database: 854
Effective search space: 391132
Effective search space used: 391132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
