Query= MSMg01no536_l15.b1 MSMg01no536_l15.b1 CHROMAT_FILE:
MSMg01no536_l15.b1 PHD_FILE: MSMg01no536_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:55 2005
(633 letters)
>mm_chr3_74120097_74121129
Length = 1033
Score = 946 bits (489), Expect = 0.0
Identities = 613/705 (86%), Gaps = 79/705 (11%)
Strand = Plus / Plus
Query: 5 gaattccaaaccttcttattgtcagcattatgtattctccaccataagaatgcatctttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gaattccaaaccttcttattgtcagcattatgtattctccaccataagaatgcatctttg 187
Query: 65 cctttcagtattaaatgcaagggccatcatttctaagtttttgttcaacgaatgtccatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctttcagtattaaatgcaagggccatcatttctaagtttttgttcaacgaatgtccatg 247
Query: 125 ccatgcacatctaatttcaggctccctcccacttgatatttaccaattctacttagtgtc 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccatgcacatctaatttcatgctccctcccacttgatatttaccaattctacttagtgtc 307
Query: 185 ccacctgtagtgagcttggttacaatctattgctctgaagtattaacatttgtctccttc 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 308 ccacctgtagtgagcttggttacaaactattgctctgaagtattaacatttgtctccttc 367
Query: 245 cttttctggtttgctgacttttcagattattattaatgtgtacttggaaatgtgttactc 304
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 368 cttttctggtttgctgacttttgagattattattaatgtgtacttggaactgtgttactc 427
Query: 305 aaagaagctcctatcaaccctcagttctgcattcattgtctgcattatgaataggacata 364
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 428 aaagaagctcctatcaactctcagttctgctttcattgtctgcattatgaataggacata 487
Query: 365 agtgaca-aatcagtggggagtgtgtgatactttacttctgaaaactcacagttcatagt 423
||||| | |||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 488 agtga-agaatcagtggggagtgtgtgatattttacttctgaaaactcacagttcgtagt 546
Query: 424 t----------------------------------------------------------- 424
|
Sbjct: 547 tttactaagaaatagcataggcctatgtaatacttaaagtaaatgtgaaaaagtaaaatg 606
Query: 425 ------------------catatagcatgcttaagtaaatatgaatacaagtataggtga 466
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tttaaacatcagcattagcatatagcatgcttaagtaaatatgaatacaagtataggtga 666
Query: 467 tttccaattagggaaatacaggcaataaatgtgttttttgaactatgattttatgaaact 526
| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 667 tatccaattagggaaatacaggcaataaatgtgttttgtgaaatatgattttatgaaact 726
Query: 527 gaaacttatcaattgattcagagtttaaacactgtattctgacatagtataaaatatatg 586
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaaacttatcaatcaattcagagtttaaacactgtattctgacatagtataaaatatatg 786
Query: 587 gtactaaaaactgatcacatttttaaaacttgctctacatttttt 631
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtactaaaaactgatcacatttttaaaacttgctctacatttttt 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_l15.g1 MSMg01no536_l15.g1 CHROMAT_FILE:
MSMg01no536_l15.g1 PHD_FILE: MSMg01no536_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:55 2005
(556 letters)
>mm_chr3_74250813_74251767
Length = 955
Score = 1000 bits (517), Expect = 0.0
Identities = 547/557 (98%), Gaps = 3/557 (0%)
Strand = Plus / Minus
Query: 1 agtgtgtggtagcagtaacttccaggaatgtaccatacaaggcaaacttaaacatgaaag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 agtgtctggtagcagtaacttccaggaatgtaccatacaaggcaaacttaaacatgaaag 696
Query: 61 tgtcagtttgaaagtgtatttagggaattcatgtttaccacatcagaaagatacatgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgtcagtttgaaagtgtatttagggaattcatgtttaccacatcagaaagatacatgcta 636
Query: 121 atgacagagagccaactttattaagaaggtcattaattgccttattacagcttgcttatt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atgatagagagccaactttattaagaaggtcattaattgccttattacagcttgcttatt 576
Query: 181 ttgaaataacacttccaaaaatgacccgatactacatagcatcactttgacaagaaatta 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 575 ttgaaataacacttccaaaaatgacccaatactacatagcatcactttgacaagaaatta 516
Query: 241 tagagtctgtgtgatcagaaaccttacagactgagttataatatgagagcaaaattaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tagagtctgtgtgatcagaaaccttacagactgagttataatatgagagcaaaattaaag 456
Query: 301 tggcaaagagaaatggtatgataagaaaacctatggcatttgttaatattaaatgatctt 360
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 455 tggcaaagggaaatggtatgataagaaaacctattgcatttgttaatattaaatgatctt 396
Query: 361 cctaatagaagatgaatatatagttagtgaagaactgttacttcacaatagtcaatgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cctaatagaagatgaatatatagttagtgaagaactgttacttcacaatagtcaatgcag 336
Query: 421 ataaaacaagaa-tcagttaatcaaggggagatgatcaaagaaaatgattcaaaaaatag 479
||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 335 ataaaacaa-aactcagttaatcaaggggagataatcaaagaaaataattcaaaaaatag 277
Query: 480 ccataattgcttatgaaatactcagagccaaatcagttctggactcatatagattatcca 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccataat-gcttatgaaatactcagagccaaatcagttctggactcatatagattatcca 218
Query: 540 gaggtgtagtcagaatt 556
|||||||||||||||||
Sbjct: 217 gaggtgtagtcagaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
