BAC Information

Click to search

BAC

Clone NameMSMg01-536N01
Chromosome3 (Build37)
Map Location 77,000,112 - 77,000,705
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536N01.T7 (MSMg01no536_n01.b1)MSMg01-536N01.TJ (MSMg01no536_n01.g1)
ACCAG603935AG603936
length754751
length of high quality
(start - end)
673 (52 - 724)670 (82 - 751)
definitionCHROMAT_FILE: MSMg01no536_n01.b1 PHD_FILE: MSMg01no536_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:02 2005CHROMAT_FILE: MSMg01no536_n01.g1 PHD_FILE: MSMg01no536_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCAACATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCCCAAGAGCAATGGTGAAGTATTGATAACCCGTTTC
AAATAAGGCTGACGTTTCTGTATGCTGCACACAATATGCATTTGACATCC
AGTGAAGCACATCATTATCTCCAAATCACATTGAGCCCTGTGCAACAGGA
GGAAATAAACATGAAAAGAAACGAAACCTCTCTGTTAGATCAAAGACTTT
TTAACAAAGTTTTTATGAACATAAAGATCTGTTGCTTTTTTTTTTAATTG
CTATGATGTTGACATCAATTTGGGCAGCACACATACTTGCAAATGTGTGC
TTAGAGATTAACATGATGTGTACATGAATAAAATAACCTCAATTCTTAGC
TCCACAGTCAAATAGAAGTTCTTGTCAATGCTCCTTTTTGCCATATATAC
TCCTTTAATATTAGTCCCACTCACTATTACAAAATTGTGTTAATAAGGCA
ATGACATATTCGTTTAAGTTTAAGAAATAATCCTTAGTAAATTCAGACAC
TTACTTGAACATAAAATACATTTTCAGTAAGTTTTAAGAATAGAAAATCT
TTTAAGAATTAAAATTATATTTCTGAGAAAATATCAATGATTACATGTTA
GTGAAAGTCAAGAATATAGAAAACATGTCAGTATTTTTAATAAAGCAAAT
GATTACTTTAAGATATATAAATACATAGCCAAAGTAAAATAAGAATTTAT
TTCA
CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGATAGACACCAACA
AACCTAATAACCCAATTTTAAAAAATGGAGTATAAAGCTAAAGAGATAAT
TCCTTTTTAAAAAAAACTTTTTAAAATCATTTTCAGCTCTTTATTGGATA
TATTCTTTGTTTACATTTCAAAGGTTATTCACTTTCCCGTTTTCTCCCAC
CAAAAACCCCTATCCCATTCCCCAGGTCCTTGCTTCTATGAGGGTGTTCC
CCAACCCATAGACCCACCCACCCACCCATCCTCACCTACCCACCTGGAAT
TCCCCTACACTGGGGCACTGAGCTTTCACAGGACCAAGAGCCTCTTCTCC
TACTGATGACCAACAAGGCCATCCTCTGCTACATATGGGGCAGGAGCCAT
AGGTCCCTCCATGTGTACACTTTGGTTGGTGGTTTAGTTCCTGGGAGCTC
TGGGGGCTCTGGCTGGTTAATATTGTTGTTTTTCCTATGGGGTTGCAAAC
TAATTCTTAACAGAAGAATCTGGAATGTTGGGGAAGCACTTAAAGCTATG
TTGAAAGTCCTTAGTCATCAGAGAACTGCAGATCGAAATGATCCTGAGAT
TCCATCTTACAACCATTAGAATGGCTAAGATAAAAAACTCGCCATACCTG
GGGATCCATCCCATAATCAGCCTTCAAACACTGACACCATTGCACACACG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_n01.b1 MSMg01no536_n01.b1 CHROMAT_FILE:
MSMg01no536_n01.b1 PHD_FILE: MSMg01no536_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:02 2005
         (673 letters)



>mm_chr3_76999833_77000905
          Length = 1073

 Score = 1064 bits (550), Expect = 0.0
 Identities = 578/594 (97%), Gaps = 12/594 (2%)
 Strand = Plus / Plus

                                                                       
Query: 92  tgacatccagtgaagcacatcattatctccaaatcacattgagccctgtgcaacaggagg 151
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgacatctagtgaagcacatcattatctccaaatcacattgagccctgtgcaacaggagg 339

                                                                       
Query: 152 aaataaacatgaaaagaaacgaaacctctctgttagatcaaagactttttaacaaagttt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaataaacatgaaaagaaacgaaacctctctgttagatcaaagactttttaacaaagttt 399

                                                                       
Query: 212 ttatgaacataaagatctgttgc--ttttttttttaattgctatgatgttgacatcaatt 269
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 400 ttatgaacataaagatctgttgcttttttttttttaattgctatgatgttgacatcaatt 459

                                                                       
Query: 270 tgggcagcacacatacttgcaaatgtgtgcttagagattaacatgatgtgtacatgaata 329
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgggtagcacacatacttgcaaatgtgtgcttagagattaacatgatgtgtacatgaata 519

                                                                       
Query: 330 aaataacctcaattcttagctccacagtcaaatagaagttcttgtcaatgctcctttttg 389
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaataacctaaattcttagctccacagtcaaatagaagttcttgtcaatgctcctttttg 579

                                                                       
Query: 390 c----------catatatactcctttaatattagtcccactcactattacaaaattgtgt 439
           |          ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccatatatatacatatatactcttttaatattagtcccactcactattacaaaattgtgt 639

                                                                       
Query: 440 taataaggcaatgacatattcgtttaagtttaagaaataatccttagtaaattcagacac 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 taataaggcaatgacatattcgtttaagtttaagaaataatccttagtaaattcagacac 699

                                                                       
Query: 500 ttacttgaacataaaatacattttcagtaagttttaagaatagaaaatcttttaagaatt 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttacttgaacataaaatacattttcagtaagttttaagaatagaaaatcttttaagaatt 759

                                                                       
Query: 560 aaaattatatttctgagaaaatatcaatgattacatgttagtgaaagtcaagaatataga 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aaaattatatttctgagaaaatatcaatgattacatgttagtgaaagtcaagaatataga 819

                                                                 
Query: 620 aaacatgtcagtatttttaataaagcaaatgattactttaagatatataaatac 673
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aaacatgtcagtatttttaataaagcaaatgattactttaagatatataaatac 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)