NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGCCCTCGGGCTTGGCAGCAAGTGGCTTTACCCATTGAACC
ATCTGAATGGCTCTGATTTTTTAAACATACAATTGTATCCCCATGTCCTA
CTTCTGTTTGATGAAGAATCTGACAAGTAGACACACCCCACTAGAAAGAA
CACTCCTGGCAATGCCTGTGTCTTGGCTTTTGAATATCACTAGACATCTA
AAGACAGAGCTGTTTGGAAAACTAAAGACTACAAGATTCGTTTGGAGCAT
CTCGTGCAGGTGAGGATGTGCTCATAGCATAATGAGAACATCTACAAAAC
AAAAGCAAAAATCAGTGTCCTTGGCTCCGCTGGTTGCGCAGAATATTAAT
GAAATAAACATCTATGAGGCTAACCTAACATTAAGCCAAGTAAGACACAT
GGCATGGCCCGGGAGTTTTTCCTTGAAGTAGAATAGCAACTATCTCTGGA
AGCTTTCCTGGAAATAAATGATCTAGCCAAGAATTATCAGTAGAGGTTAG
AAAACAGAGGATACCCACGAAGGAAAAAACACTTTTACATGGTATCAAAA
TATATTTTTATAAACAAGTTATTAAAAAGGAGAAAATAGAGGCTAGAGAG
ATGGCTCAGTGGTTAAGAGCACTTGTTGCTCTTACAGGAGACTGACTTTA
CTTCTCAATGCCCACATGGTGGGTCACAACCCATCATGTACACAGTTCCA
GGGCATCAGACACACTGGTCTGACCTCTTCTAGC

NNNCCCGTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATCATGCACTCCAACCCC
ACTCATCTCCCCCTCCCTCGTATCCGCCCTCTACCCCTGCTACCTCCCCC
CTCTAGCAAAGAAGATAATCTCATTGTAGAAGCTGTAGTGTGTCACAGTG
GGTCCCACCGTACACCCTTTAGTCCACACTTCTTTGCTTGCACATGTTCA
ACGCAATGACTCGTTGGTCTGGTACGAGGCCTCTGACTTCTGCTGCATTA
GCAATACTGGAACTTCACTGGGACTCCTCTCAGACATCCTGTTGTTATCC
TGTGTCATGAAGAGTCTGCAGTTTTGGATCTGGAGGTCCAACCTCTTCAT
GTACTTCAGTAATTCATCAGTGGGGTAGATGTTGGGGTAGGCCAGGGAAT
TGACTCTTTTTACAACCTCATGAAACTCTGGATTCCAGGGAAGGTAAAAG
AAATTTCTTACCTGACATGTAAAAATTCTTCAACAAAATATTTTGTTTGC
TATCCTGACATTTGCTTTAAAAGAGGTGGGGGAGGGGGGGTTTAGATGTG
CAGGCAAAGACATACATGTCCAGGGCATAGGGATGGCCCCCGCCCCCCAA
ATATGTTGAGGATCAGTTATGAGCACACAACGCATTATTTAAGCTTGTCT
ATATTAGTATGCTTGGCATCTATAGACTAAAATGTTAATAATTGACAAAA
TAATGGAGAAATCCGAGATGGNTTAATGTANCTTAGTAATGGGATTTGCT
AACATC

Query= MSMg01no536_n21.b1 MSMg01no536_n21.b1 CHROMAT_FILE:
MSMg01no536_n21.b1 PHD_FILE: MSMg01no536_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:05 2005
         (584 letters)



>mm_chr3_68793301_68794284
          Length = 984

 Score = 1106 bits (572), Expect = 0.0
 Identities = 578/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagccctcgggcttggcagcaagtggctttacccattgaaccatctgaatggct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagccctcgggcttggcagcaagtggctttacccattgaaccatctgaatggct 264

                                                                       
Query: 65  ctgattttttaaacatacaattgtatccccatgtcctacttctgtttgatgaagaatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgattttttaaacatacaattgtatccccatgtcctacttctgtttgatgaagaatctg 324

                                                                       
Query: 125 acaagtagacacaccccactagaaagaacactcctggcaatgcctgtgtcttggcttttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaagtagacacaccccactagaaagaacactcctggcaatgcctgtgtcttggcttttg 384

                                                                       
Query: 185 aatatcactagacatctaaagacagagctgtttggaaaactaaagactacaagattcgtt 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatatcattagacatctaaagacagagctgtttggaaaactaaagactacaagattcgtt 444

                                                                       
Query: 245 tggagcatctcgtgcaggtgaggatgtgctcatagcataatgagaacatctacaaaacaa 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tggagcatctcgtgcaggtgaggatgtgctcaaagcataatgagaacatctacaaaacaa 504

                                                                       
Query: 305 aagcaaaaatcagtgtccttggctccgctggttgcgcagaatattaatgaaataaacatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagcaaaaatcagtgtccttggctccgctggttgcgcagaatattaatgaaataaacatc 564

                                                                       
Query: 365 tatgaggctaacctaacattaagccaagtaagacacatggcatggcccgggagtttttcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgaggctaacctaacattaagccaagtaagacacatggcatggcccgggagtttttcc 624

                                                                       
Query: 425 ttgaagtagaatagcaactatctctggaagctttcctggaaataaatgatctagccaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgaagtagaatagcaactatctctggaagctttcctggaaataaatgatctagccaaga 684

                                                                       
Query: 485 attatcagtagaggttagaaaacagaggatacccacgaaggaaaaaacacttttacatgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attatcagtagaggttagaaaacagaggatacccacgaaggaaaaaacacttttacatgg 744

                                                   
Query: 545 tatcaaaatatatttttataaacaagttattaaaaaggag 584
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatcaaaatatatttttataaacaagttattaaaaaggag 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_n21.g1 MSMg01no536_n21.g1 CHROMAT_FILE:
MSMg01no536_n21.g1 PHD_FILE: MSMg01no536_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:06 2005
         (505 letters)



>mm_chr3_68973024_68973928
          Length = 905

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 166 tgttcaacgcaatgactcgttggtctggtacgaggcctctgacttctgctgcattagcaa 225
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 905 tgttcaacgcaatgactcgttggtctggtatgaggcctctgacttctgctgcattagcaa 846

                                                                       
Query: 226 tactggaacttcactgggactcctctcagacatcctgttgttatcctgtgtcatgaagag 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tactggaacttcactgggactcctctcagacatcctgttgttatcctgtgtcatgaagag 786

                                                                       
Query: 286 tctgcagttttggatctggaggtccaacctcttcatgtacttcagtaattcatcagtggg 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tctgcagttttggatctggaggtccaacctcttcatgtacttcagtaattcatcagtggg 726

                                                                       
Query: 346 gtagatgttggggtaggccagggaattgactctttttacaacctcatgaaactctggatt 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtagatgttggggtaggccagggaattgactctttttacaacctcatgaaactctggatt 666

                                                                       
Query: 406 ccagggaaggtaaaagaaatttcttacctgacatgtaaaaattcttcaacaaaatatttt 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccagggaaggtaaaagaaatttcttacctgacatgtaaaaattcttcaacaaaatatttt 606

                                                   
Query: 466 gtttgctatcctgacatttgctttaaaagaggtgggggag 505
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gtttgctatcctgacatttgctttaaaagaggtgggggag 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)