Query= MSMg01no537_d03.b1 MSMg01no537_d03.b1 CHROMAT_FILE:
MSMg01no537_d03.b1 PHD_FILE: MSMg01no537_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:30 2005
(609 letters)
>mm_chr3_152268689_152269697
Length = 1009
Score = 1110 bits (574), Expect = 0.0
Identities = 598/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgccagtgcccttctcaccgggagctagcaacagggtggcgccgacttccag 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgccagcgtccttctcaccgggagctagcaacagggtggcgccgacttccag 264
Query: 65 cttcattttctaaccgagaggaggcagcttcactgagtcacttggcttgctctctgccta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcattttctaaccgagaggaggcagcttcactgagtcacttggcttgctctctgccta 324
Query: 125 tggagtgtgaagaagactggcagtgtgtgagcttcaggaagggaaaaggacgtcaggaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagtgtgaagaagactggcagtgtgtgagcttcaggaagggaaaaggacgtcaggaca 384
Query: 185 cgtgcttctcacagagaccgaatgctgggagctataaatacagtccctgcttgctcttct 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgtgcttctcgcagagaccgaatgctgggagctataaatacagtccctgcttgctcttct 444
Query: 245 cattttattgctgtttaggaatacacataatttacaccccaggactgtggctcttgcttt 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattttattgctgtttaggaatagacataatttacaccccaggactgtggctcttgcttt 504
Query: 305 gctggttggtataatggcaacactgtgcacaaatgacttcattgtccagggcttttgatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctggttggtataatggcaacactgtgcacaaatgacttcattgtccagggcttttgatt 564
Query: 365 tactttttaatgtaaaggaggaaaaaatgaaagtgcaa-tcatactttacctttcagagt 423
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 565 tactttttaatgtaaaggaggaaaaaatgaaagtg-aagtcatactttacctttcagagt 623
Query: 424 acacaataacaacaatgctgaaaagcaatcggattcacgcctcaattctgctctggctcc 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 acacaataacaacaatgctgaaaagcaatcggattcatgcctcaattctgctctggctcc 683
Query: 484 attaaaatcattcacacttatgaagacctgtgtaggttggtcagtggaatgggtctccct 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttaaaatcattcacacttatgaagacctgtgtaggttggtcagtggaatgggtctccct 743
Query: 544 gagcaacacaaatatgcggcctccaggagcagcaacgacactttcctgaggtagcaagca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagcaacacaaatatgcggcctccaggagcagcaacgacactttcctgaggtagcaagca 803
Query: 604 ctctct 609
||||||
Sbjct: 804 ctctct 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_d03.g1 MSMg01no537_d03.g1 CHROMAT_FILE:
MSMg01no537_d03.g1 PHD_FILE: MSMg01no537_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:30 2005
(563 letters)
>mm_chr3_152409554_152410514
Length = 961
Score = 922 bits (477), Expect = 0.0
Identities = 517/531 (97%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 1 caaggacagaatattctcactcactgtgaaaagcaggagtgtttacttaaagttcacacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caaggacagaatattctcactcactgtgaaaagcaggagtgtttacttaaagttcacacg 470
Query: 61 gtccctgcctgacctgaggacctgaggtgcagactttgtaaatcagggaacagccgtcag 120
|||||||||| | ||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct: 469 gtccctgcctaa--agaggacctgaggtgcagactttgtaaaacagggaacaactgtcac 412
Query: 121 caatggcacagtgcccctgtgacgaccagctcttctaactttgctcctatagagcccagc 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 411 caatggcacagtgcacctgtgacgaccagctcttctaactttgctcctatagagcccaac 352
Query: 181 acagtcctgtgactacaatcccttgggcaaactttactctgcttctctggccaatagaag 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 351 acagtcctgtgactacaatcccttgggcaaactttactctgcttctctagccaatagaag 292
Query: 241 gcaagtgtgattaccacttagaagcatatcaaatcgctttacctataaataattactgat 300
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gcaagtatgattacgacttagaagcatatcaaatcgctttacctataaataattactgat 232
Query: 301 cagtcttttcgtttctttttggagggaagggttgttctttaaacaggatctctcta-atg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 231 cagtcttttcgtttctttttggagggaagggttgttctttaaacaggatctctctacatg 172
Query: 360 gccctccgtagaccaagctgatctcaaattcacagagattcacctgcctccatctcatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gccctccgtagaccaagctgatctcaaattcacagagattcacctgcctccatctcatta 112
Query: 420 gtcttgggattaagggtgtatgccaccatgcctggcacttatagattattcttattgaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtcttgggattaagggtgtatgccaccatgcctggcacttatagattattcttattgaaa 52
Query: 480 gacagtaaaataatcatcactgaattttcaaatgtaagcaagaaaccaaga 530
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gacagtaaaataatcatcactgaattttcaaatgtaagcaagaaaccaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 961
Length adjustment: 10
Effective length of query: 553
Effective length of database: 951
Effective search space: 525903
Effective search space used: 525903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
