BAC Information

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BAC

Clone NameMSMg01-537F07
Chromosome3 (Build37)
Map Location 92,619,255 - 92,619,820
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101
Downstream geneKprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537F07.T7 (MSMg01no537_f07.b1)MSMg01-537F07.TJ (MSMg01no537_f07.g1)
ACCAG604328AG604329
length750752
length of high quality
(start - end)		595 (50 - 644)652 (79 - 730)
definitionCHROMAT_FILE: MSMg01no537_f07.b1 PHD_FILE: MSMg01no537_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:40 2005CHROMAT_FILE: MSMg01no537_f07.g1 PHD_FILE: MSMg01no537_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAATATTAACAACTCAAATGGCTGAGAAATACATAAAGAA
ATGTTCAACATCCTCACACATCAAGGAAATACAAATTCAAGCTACTTCTA
TCTATAAAGCTAATATATGCTTTTGTTGATTGATGGATTTTTTCTTTTTT
TCTTTTTTTTTGTTTGTTTGTTTGTTTTGTTTTCTGAGACAGGGTTTCTC
TGGGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACTAGGCTGGCCTC
AAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC
ATTCACCAACACGCCCAGCCTGGATTTTTTTTTTCTTGATCCGTTCAACC
AGTCTCTGTCTTGTGATTGAAAAGCTTATGCCATGGATATTTAAAATTAT
TATTGAAATGTATGTGTTAAGAGCTCTAAATAGGATGTTTCCATCAAATC
CTTCCCCACAGAACTTAAGGAACCCTGTAGAAGAGAAGACTGAAGGAATT
GGAGAGACCAGACAGAGGACAACAGAACTTGCCCATCTAAAACAACTAAG
CAAAGTGCATATGAGCTCATAGACACTGAGGCAGCAGTCTCAGAGCCTCC
AGGGATCTGTACTAAGTCCTCTGCACATATACTTTAGCTCTTAGTGTAGT
TCTTTTATGGGTCTCCCAAATGTGTGAACAAGTANGTCTCTTGATTCTTG


NCCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCTCAGGGTTGGCTCACAG
ACTTTCTAGAACATTGAAACACTGGTGGAGTCTTATCTATATATCAAAAT
CAATCCTTACAGGCACTTATAATAAAACAATACTGAAAGCGAGCACACAG
ATCCATATACCAGACTAATGCAGGGATAGGTTTTGAGTATATGTGCTATT
GGAATGCTAATGAAAGCCTCCTCCGGGAGGCTAAATTTCCATGAAACTCT
GCCTCAGGACTGCTTCCAGGTTTCTAAACCTGTAATGGGAGTCACTAATG
GAGTGGATGTAGCAGATGCTAGTAACCAAAAGACATCCTGTGTGCATGCA
GATACTTTGATGATGTTTGGAGGTATAGTTGGATGGTGAGCAGATTTGGT
CCATGGCCATGGATTAGTCCTGTGTTTTGGATGACTAGTTCTATAGAGCA
TCTGCATTGTGGTGATTGAGATGAACCAGGAAAATGGGTGATAATTGGTG
ATTCTTGTGTTTTCCATTGTCAGGGACCATCACAAGTTTATTTACCTAAA
TAAGAGGGTTTCTGATCTGGAAAGTAAAGCTAGATAAACAGACTTAGAAA
GAACCCAGGCTTTGCCTAATCTACCTGTCATACTCTTCATGTTTTGCCAC
AGGAATCTTGAGCTGAGTTAACATCTTTCCCCTTTTCTCTGGAGTTATTC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_f07.g1 MSMg01no537_f07.g1 CHROMAT_FILE:
MSMg01no537_f07.g1 PHD_FILE: MSMg01no537_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
         (652 letters)



>mm_chr3_92618769_92619820
          Length = 1052

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%)
 Strand = Plus / Minus

                                                                        
Query: 87   acttataataaaacaatactgaaagcgagcacacagatccatataccagactaatgcagg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 acttataataaaacaatactgaaagcgagcacacagatccatataccagactaatgcagg 993

                                                                        
Query: 147  gataggttttgagtatatgtgctattggaatgctaatgaaagcctcctccgggaggctaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  gataggttttgagtatatgtgctattggaatgctaatgaaagcctcctccgggaggctaa 933

                                                                        
Query: 207  atttccatgaaactctgcctcaggactgcttccaggtttctaaacctgtaatgggagtca 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  atttccatgaaactctgcctcaggactgcttccaggtttctaaacctgtaatgggagtca 873

                                                                        
Query: 267  ctaatggagtggatgtagcagatgctagtaaccaaaagacatcctgtgtgcatgcagata 326
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  ctaatggagtggatgtagccgatgctagtaaccaaaagacatcctgtgtgcatgcagata 813

                                                                        
Query: 327  ctttgatgatgtttggaggtatagttggatggtgagcagatttggtccatggccatggat 386
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 812  ctttgatgatgtttggaggtgtagttggatggtgagcagatttggtccatggccatggat 753

                                                                        
Query: 387  tagtcctgtgttttggatgactagttctatagagcatctgcattgtggtgattgagatga 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 752  tagtcctgtgttttggatgactagttctatagagcatctgcattgtggtgactgagatga 693

                                                                        
Query: 447  accaggaaaatgggtgataattggtgattcttgtgttttccattgtcagggaccatcaca 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692  accaggaaaatgggtgataattggtgattcttgtgttttccattgtcagggaccatcaca 633

                                                                        
Query: 507  agtttatttacctaaataagagggtttctgatctggaaagtaaagctagataaacagact 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  agtttatttacctaaataagagggtttctgatctggaaagtaaagctagataaacagact 573

                                                                        
Query: 567  tagaaagaacccaggctttgcctaatctacctgtcatactcttcatgttttgccacagga 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  tagaaagaacccaggctttgcctaatctacctgtcatactcttcatgttttgccacagga 513

                                      
Query: 627  atcttgagctgagttaacatctttcc 652
            ||||||||||||||||||||||||||
Sbjct: 512  atcttgagctgagttaacatctttcc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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