NNNAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTAATAACTATGTTTAATAAGGCAAAGTTTTAAATG
ATGATCACTTTATATTTTCTCCTCTTTCTCTTTGTGAGTACGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGTAAAAGAGAGAAAGA
GAAATATAGGTGGTGTGTGCTAGCACATGTGTGTGTGTGTGTGTATGTGT
GTGTCTATGCATGCTCCACTGATGTCCAAATCTCAATGCTTATTCTGTTC
TTTTATTGCACTCATCTTATTTTTAAAGAAAGAGTCTCTCATTCAGCTTG
AAGCTCACTGTGTGTGCTAGACCAAATCGCCCAGGAGCACTCATCCTCGT
GTTTCCGTCCACTTCCAGGATGCGGTTATTGAGAGAAGCACATATGTGCT
CTAGGGATCATTACTCTGGCTCTCATTCATTCCCACTGACTGCTTTTCAC
ACAGAGACACCTCCCTAACCCAAGAAAATATTACTTTAACTATGAAAATG
TGAGTAGTTTTCACTCCTCCTCAAGTAAACATCTCCTTGTAACAGATAAT
GACTACTATAGAAAAGCACAACACATCAAAATTCCGATTTGTTGAGCCCA
GTCCCAGTGAATACACATATAAACATTCCTACAAGTAAGTTTCAGGAAGT
ATTGAAGAAGATGGCCAGAAGATCGGGGAGTTTGN

NNNNNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGAGCCCAATGGT
CCCCAGAGAAGGTACCAGTTCCAGGTGCTCTAACACACACAGGATCTTAG
GATCCCAGGATCTCAGGATCCCAGGAGCTTGGTCAAGCCAGGAACTTAGG
GTCTCAGAGAAAGTTTGACTGCCAAGAACTCTGACACACGCAGAATATCT
CAGGAACACAGGATCCCAGAATCACAGGATCACAGAGAAAGCTGGACTCT
GAGGAATTCTGATTCAACCAGGATTACAGGAAGGACAAGCTACAATCAGC
TATAATGAGGGCATGGAGCACTTCAGATAATCAGGTGGATGGAGACAAGC
TTAAGAACAGAAGCCACAGAAACCAAGGATACTTGGCATCATCAGAATCC
AAATCTCCCTCCATAGCAAGTCCTGAATACACCATCACATCAGAAAAGCA
ACATATGGATCCAAAGTCACTTCTCATGATGATGATGGAGGACTATAAGA
AGGACCTAAATAACTACCTTTAAAAAATCCAGAAGAACACAGGTAAACAG
GTAGAAGCTATTAAAGTGGAAACAAAAAATTCCTTTAAAGAATTACAGGA
AATAGTACTAAACAGGTTAAAGAATTAAATAAAACCAGCCAGGATCTAAA
AAGGGAAGTAGAAACAATTAAGAAATCACAAAGGGAGA

Query= MSMg01no537_f23.b1 MSMg01no537_f23.b1 CHROMAT_FILE:
MSMg01no537_f23.b1 PHD_FILE: MSMg01no537_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:43 2005
         (628 letters)



>mm_chr3_48095882_48096909
          Length = 1028

 Score = 1141 bits (590), Expect = 0.0
 Identities = 596/600 (99%), Gaps = 4/600 (0%)
 Strand = Plus / Minus

                                                                        
Query: 33   gcaaagttttaaatgatgatcactttatattttctcctctttctctttgtgagtac---- 88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 1028 gcaaagttttaaatgatgatcactttatattttctcctctttctctttgtgagtacgtgt 969

                                                                        
Query: 89   gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagtaaaagagagaaagag 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagtaaaagagagaaagag 909

                                                                        
Query: 149  aaatataggtggtgtgtgctagcacatgtgtgtgtgtgtgtgtatgtgtgtgtctatgca 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  aaatataggtggtgtgtgctagcacatgtgtgtgtgtgtgtgtatgtgtgtgtctatgca 849

                                                                        
Query: 209  tgctccactgatgtccaaatctcaatgcttattctgttcttttattgcactcatcttatt 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  tgctccactgatgtccaaatctcaatgcttattctgttcttttattgcactcatcttatt 789

                                                                        
Query: 269  tttaaagaaagagtctctcattcagcttgaagctcactgtgtgtgctagaccaaatcgcc 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  tttaaagaaagagtctctcattcagcttgaagctcactgtgtgtgctagaccaaatcgcc 729

                                                                        
Query: 329  caggagcactcatcctcgtgtttccgtccacttccaggatgcggttattgagagaagcac 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  caggagcactcatcctcgtgtttccgtccacttccaggatgcggttattgagagaagcac 669

                                                                        
Query: 389  atatgtgctctagggatcattactctggctctcattcattcccactgactgcttttcaca 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668  atatgtgctctagggatcattactctggctctcattcattcccactgactgcttttcaca 609

                                                                        
Query: 449  cagagacacctccctaacccaagaaaatattactttaactatgaaaatgtgagtagtttt 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  cagagacacctccctaacccaagaaaatattactttaactatgaaaatgtgagtagtttt 549

                                                                        
Query: 509  cactcctcctcaagtaaacatctccttgtaacagataatgactactatagaaaagcacaa 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  cactcctcctcaagtaaacatctccttgtaacagataatgactactatagaaaagcacaa 489

                                                                        
Query: 569  cacatcaaaattccgatttgttgagcccagtcccagtgaatacacatataaacattccta 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488  cacatcaaaattccgatttgttgagcccagtcccagtgaatacacatataaacattccta 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)