GCNAATAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATATCTGGTAATGGAAATCTTGACAGTTTCATATGG
CTCCTGGGATCATGGACCTTAGGAAATTATCTACTAATCTCTTAGCTCTT
AATTACATATTAAATGATTTTGCTTATTCAAATAATATCCACCTATAAAA
TTGGCATATGTTTATATTTGTTTATCTATATAGTATTATTTGTATATAAT
ATAAAAATAATTTTATATTTATATTACATTATAATCAATACATATAGAGT
GTTGAGGAGATGTCACAAAGACAGAAGTGTGATTCTCATTGTCCATGTAA
AAAGCCATATATGTCAGCGTGCAACTCTGTTTCCAGTGATGGGGAAGTGG
AGCCAGGATGATCCTGGTTCATTCATGAATCTGCCTATGTAGGGAGAACA
ACACCTTAATTATATTTTTGGATGCATCACCTGTCAATTAAAGCCAAATG
GCCTATGGCTTAGGCAGAAAATATAAGGACACATTGGAAGGAGAAAAAGA
TTCTGGGAGAGAAGGAGTCAGGTGACTCACTAGAAGATATGACAAGCCAG
ATGCATGGTACCTAAGGACAGGTGACTATGTGGCAGAATGTGGACAAGAA
TAAATGGGATAATTTTAAGTTTTATCCAATAANGGAAGAGCATAGCTTTA
CAGCTAGGGTATTTTTAAATGTT

NNNNNCCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGC
CCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGT
TATTAATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGCTAAA
GATCCTTTACCAATCTGTTGGTGGCCTTTTTGTCTTATTGATAGTGTGTT
TTGTCTTGCAGAAGCTTTGCACTTTTATGAGGTACTATTTGTTGATTCTC
GATCTTACAGCACAAGCCATAGCTGTTCTATTCAGGAATTTTTCCCCTGT
ACCCATATCTTTGAGGCTTTTCCCTACTTTGTTCTCCATAAGTTTCAGTG
TCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTATTTGACCTTAGTACA
AGGAGATAGGAATGGATCAATTCACATTCTTCTACATGATAACTGCCAGT
TGTGCCAGCACCATTTCAGCTTCCAAACGCTGACACCATTGCATACACTA
GCAAGATTTTGCTGAAAGGGCCCTGATATAGCTGTCTCTTGTGAGACTAT
GCCGGGGCCTAGCAAACAAAGAAGTAGATGCTCACAATCAGCTATTGGAT
GGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCAAGGAGCTGA
AGGGATCTGCTACTCTATAGGAGGAA

Query= MSMg01no537_i17.b1 MSMg01no537_i17.b1 CHROMAT_FILE:
MSMg01no537_i17.b1 PHD_FILE: MSMg01no537_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:56 2005
         (629 letters)



>mm_chr3_73922871_73923899
          Length = 1029

 Score = 1143 bits (591), Expect = 0.0
 Identities = 616/625 (98%), Gaps = 2/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatatctggtaatggaaatcttgacagtttcatatggctcctgggatcatggac 63
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 204 ggaattcatatctggtaatggaaatcttgacagttttgtatggctcctgggatcatggac 263

                                                                       
Query: 64  cttaggaaattatctactaatctcttagctcttaattacatattaaatgattttgcttat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaggaaattatctactaatctcttagctcttaattacatattaaatgattttgcttat 323

                                                                       
Query: 124 tcaaataatatccacctataaaattggcatatgtttatatttgtttatctatatagtatt 183
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 324 tcaaataatatccacctataaaattggcat--gtttatatttgtttatctatatagtatt 381

                                                                       
Query: 184 atttgtatataatataaaaataattttatatttatattacattataatcaatacatatag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttgtatataatataaaaataattttatatttatattacattataatcaatacatatag 441

                                                                       
Query: 244 agtgttgaggagatgtcacaaagacagaagtgtgattctcattgtccatgtaaaaagcca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtgttgaggagatgtcacaaagacagaagtgtgattctcattgtccatgtaaaaagcca 501

                                                                       
Query: 304 tatatgtcagcgtgcaactctgtttccagtgatggggaagtggagccaggatgatcctgg 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 tatatgtcagcgtgcaactctgtttccagtgatagggaagtggagccaggatgatcctgg 561

                                                                       
Query: 364 ttcattcatgaatctgcctatgtagggagaacaacaccttaattatatttttggatgcat 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 562 ttcattcatgaatctgcctatgtagggagaacaacagcttaattatatttttggatgcat 621

                                                                       
Query: 424 cacctgtcaattaaagccaaatggcctatggcttaggcagaaaatataaggacacattgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 622 cacctgtcaattaaagccaaatggcctatggcttaggcagaaaatataagggcacattgg 681

                                                                       
Query: 484 aaggagaaaaagattctgggagagaaggagtcaggtgactcactagaagatatgacaagc 543
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaggataaaaagattctgggagagaaggagtcaggtgactcactagaagatatgacaagc 741

                                                                       
Query: 544 cagatgcatggtacctaaggacaggtgactatgtggcagaatgtggacaagaataaatgg 603
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 742 cagatgcatggtacctaaggacaggtgactatgtggcagaatgtggactagaataaatgg 801

                                    
Query: 604 gataattttaagttttatccaataa 628
           |||||||||||||||||||||||||
Sbjct: 802 gataattttaagttttatccaataa 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)