Query= MSMg01no537_n03.b1 MSMg01no537_n03.b1 CHROMAT_FILE:
MSMg01no537_n03.b1 PHD_FILE: MSMg01no537_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:17 2005
(714 letters)
>mm_chr3_45211294_45212412
Length = 1119
Score = 1265 bits (654), Expect = 0.0
Identities = 698/716 (97%), Gaps = 7/716 (0%)
Strand = Plus / Plus
Query: 5 gaattcttacaccttcttcacattcatacctcatgttgataaataaattatattttcata 64
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcttatacctacttcacattcatacctcatgttgataaataaattatatttt-ata 263
Query: 65 ttaactttcagcatttaatagtgtattttccaatgataggaatataaaatgctaagacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaactttcagcatttaatagtgtattttccaatgataggaatataaaatgctaagacat 323
Query: 125 atttacatttttgcatttagttagcttatgagttttattgctgtagtgtatggatttaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttacatttttgcatttagttagcttatgagttttattgctgtagtgtatggatttaag 383
Query: 185 tgtgtttttctcttcacaattttttccaatctatgatattttaatttcctcatgatataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgtttttctcttcacaattttttccaatctatgatattttaatttcctcatgatataa 443
Query: 245 aaaaaagaaaagatggacactttattagaatgatttttgtgaatgcttccttataaagca 304
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataaagaaaagatggatactttattagaatgatttttgtgaatgcttccttataaagca 503
Query: 305 gtcaatgaaggtgttatatactccagttacggtatattatccaggtgagtttcctgatgg 364
||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 504 gtcgatgaaggtgttatatactacagttatggtatattatccaggtgagtttcctgatgg 563
Query: 365 agaccaaggacattctaggtgttggtaactatgtgagtaa------gaatttgatgagca 418
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 564 agaccaaggacattctaggtgttggtaactatgtgagtaaaagtaagaattcgatgagca 623
Query: 419 agtatcatatattttaaagtgaatgtcatagaatgcttaacctacaaattaaatctcaag 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 agtatcatatattttaaagtgaatgtcatagaatgctaaacctacaaattaaatctcaag 683
Query: 479 gcttagtacaactttgttttgtctaagttacaaaaggctatgttttaggtcaattaaagg 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 gcttagtacaactttgttttgtctaagttacagaaggctatgttttaggtcaattaaagg 743
Query: 539 tgttttaaatagtactagcagaaagaaataacaacttctaagagcttattatgattctag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgttttaaatagtactagcagaaagaaataacaacttctaagagcttattatgattctag 803
Query: 599 ttcattttttaatatacttatcaaacttgaatacatctgaatctcattatcagatgcaga 658
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 ttcattttttaatatacttatcaaacttgaatacatctaaatctcattatcagatgcaga 863
Query: 659 cattcttactgtcaccacattagaaattattaaataagaatcatcttctgtagtag 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cattcttactgtcaccacattagaaattattaaataagaatcatcttctgtagtag 919
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1119
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1109
Effective search space: 780736
Effective search space used: 780736
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no537_n03.g1 MSMg01no537_n03.g1 CHROMAT_FILE:
MSMg01no537_n03.g1 PHD_FILE: MSMg01no537_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:18 2005
(121 letters)
>mm_chr3_45366615_45367135
Length = 521
Score = 219 bits (113), Expect = 6e-62
Identities = 119/121 (98%)
Strand = Plus / Minus
Query: 1 caggtttttccatgaatgcaatacaaaggaacctcagatggattttaaaaactatgttag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggttttaccatgaatgcaatacaaaggaacctcagatggattttaaaaactatgttag 262
Query: 61 ccttttgtagaacctgagggagacaaatgatgagttcatttgcttgtttgcttttgattt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ccttttgtagaacctgagggagacaaatgatgagtttatttgcttgtttgcttttgattt 202
Query: 121 t 121
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space: 57969
Effective search space used: 57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
