Query= MSMg01no537_p08.b1 MSMg01no537_p08.b1 CHROMAT_FILE:
MSMg01no537_p08.b1 PHD_FILE: MSMg01no537_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
(589 letters)
>mm_chr3_130937415_130938403
Length = 989
Score = 1079 bits (558), Expect = 0.0
Identities = 579/586 (98%)
Strand = Plus / Plus
Query: 4 taattattcttgtgctgtctccaaaacccacgatgcttaaaactccatctctgaatagct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 taattattcttgtgctgtctccaaaacccacgatgcttaaaactccatctctgaacagct 263
Query: 64 tgctttcaatggaggtaacacacattggctcacgacggtgtgacacaagtgtaccactgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctttcaatggaggtaacacacattggctcacgacggtgtgacacaagtgtaccactgt 323
Query: 124 caatatcctgactcttgttttgcactgtggttattcaagatacacctattggaggggaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caatatcctgactcttgttttgcactgtggttattcaagatacacctattggaggggaac 383
Query: 184 tgaagggtgcatagaacgctatagatctatagttggatccaaatgaaaggttaaaaacag 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaagggtgcatagaaccctatagatctatagttggatccaaatgaaaggttaaaaacag 443
Query: 244 atgccctgctgaacaacaacaggtcatcttgctccttctaggccgtccattagtgtgaat 303
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 444 atgccctgctgaacaacaacaggccatcttgctccttctaggctgtccattagtgtgaat 503
Query: 304 ctctatcctgctgttatggctggacttgctttgttctccaaaggctgatgtgttgaaatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctatcctgctgttatggctggacttgctttgttctccaaaggctgatgtgttgaaatc 563
Query: 364 ttgattccacgtatagcggatccttcaagtgttggggcctggaaaggtactcacagggct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgattccacgtatagcggatccttcaagtgttggggcctggaaaggtactcacagggct 623
Query: 424 ctccccacacaagtgggcttagaattttctcagagatgggtcaagtctagtgactagatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctccccacacaagtgggcttagaattttctcagagatgggtcaagtctagtgactagatt 683
Query: 484 acttttgaaaggttagacagttacaaaccagggtcatcctatatccacacctaagaccct 543
|||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 684 acttttgagaggttagacagttacaaaccagggtcatcctatacccactcctaagaccct 743
Query: 544 tctgtattcagctgttttgcttcttagtctctctgccacattggga 589
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctgtattcagctgttttgcttcttagtctctctgccacattggga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_p08.g1 MSMg01no537_p08.g1 CHROMAT_FILE:
MSMg01no537_p08.g1 PHD_FILE: MSMg01no537_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
(595 letters)
>mm_chr3_131129047_131130041
Length = 995
Score = 895 bits (463), Expect = 0.0
Identities = 490/499 (98%), Gaps = 2/499 (0%)
Strand = Plus / Minus
Query: 98 gtgtgtgtatgcgtgtgtgtgctct-cgcgtgcgtacgtttatctgcatcacgtgcatcc 156
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 995 gtgtgtgtatgcgtgtgtgtgct-tgcgcgtgcgtacgtttatctgcatcacgtgcatcc 937
Query: 157 cggttcccccatgggccagaaggtggtgtggatctcctggtgctggagtggctgtgagct 216
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tggttcccccgtgggccagaaggtggtgtggatctcctggtgctggagtggctgtgagct 877
Query: 217 gccctgtgtgagtgctgagtacagcctggttcctccacaagagccataagctccctaacc 276
|||| |||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 876 gccccgtgtgagtgctgagaatagcccggttcctccacaagagccataagctccctaacc 817
Query: 277 actgaaccatcactcagcccctctcagctttctggttttaatttaacgatttgaattggg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 actgaaccatcactcagcccctctcagctttctggttttaatttaacgatttgaattggg 757
Query: 337 ttactgagggcagaagacaacttgtaaccctcaggttagataacagtctcaaccttcccc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttactgagggcagaagacaacttgtaaccctcaggttagataacagtctcaaccttcccc 697
Query: 397 tctttcgctgaccctgctatctaaggggagaggtagaccctggctatgtatgattcaagg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tctttcgctgaccctgctatctaaggggagaggtagaccctggctatgtatgattcaagg 637
Query: 457 ccaagcgtgtctgagttgccctgacagcccagttgtgtccagtgaccacctgacagtcca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ccaagcgtgtctgagttgccctgacagcccagttgtgtccagtgaccacctgacagtcca 577
Query: 517 ttggaacttgtgtggacccaattcccccagcaggccctcccccagtccctccccagtccc 576
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttggaacttgtgtggacccaactcccccagcaggccctcccccagtccctccccagtccc 517
Query: 577 ctccatcatctccagatga 595
|||||||||||||||||||
Sbjct: 516 ctccatcatctccagatga 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
