Query= MSMg01no537_p11.b1 MSMg01no537_p11.b1 CHROMAT_FILE:
MSMg01no537_p11.b1 PHD_FILE: MSMg01no537_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
(601 letters)
>mm_chr3_152814509_152815515
Length = 1007
Score = 919 bits (475), Expect = 0.0
Identities = 570/605 (94%), Gaps = 10/605 (1%)
Strand = Plus / Plus
Query: 5 gaattctctttgttctc-caattatcaacatgaattttcctgttagtttttggtgggagt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttgttctcacaattatcaacatgaattttcctgttagtttttggtgggagt 264
Query: 64 aatagtacctctctttaaacaagatggtattaaataccttttagccagcttcgag----- 118
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 265 aatagtacctctctttaagcaaggtggtattaaataccttttagccagcttcgagattct 324
Query: 119 -atttcaccttcctgattgtgtatctcagtgaacagtttccattctatcagatgactttg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 tatttcaccttcctgattgtgtatctcagtgaacagtttccattctatcagatgacttcg 384
Query: 178 tttagtttgaacattacatttctgtcttgcttaagaaaactttacttgtgcaaagggcgt 237
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 tttag-ttgaacattaaatttctgtcttgcttaagaaaactttacttgtgcaaaggtcgt 443
Query: 238 aagggactttccccacgttctacatcaacagtataacactcttctttcatggatgaatat 297
|||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 444 aaggaactttccccatgttctacgtcaacagtataacattcttctttcatggatgaatat 503
Query: 298 ctatattatctgggatggccttgtacgcctttcttgagttaaatgttccacttcactatt 357
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 504 ctatattatctgggatggccttgtacgcctttcttgagttaaatgtccctcttcactatt 563
Query: 358 tatccagcgaaaacccagttgccatggtgcctttattgtccatccattgtggagtcactc 417
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 564 tatccagcgaaaacccagttgccatggtgcctttattatccatccattatggagtcactc 623
Query: 418 atccccaatgtccgttctctggcactgcaggtgtctggtgataccaagcatcctgaaggc 477
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 624 atccccaatgtccgttctctggcactgcaggtgtctagcgataccaagcatcctgaaggc 683
Query: 478 actgcttgacaaagttctggtgcttggacaaccggactgacctttct-ctgcccttggtg 536
|||||||||||||| ||| |||||| |||||||||||||||| || | ||||||||||||
Sbjct: 684 actgcttgacaaagctcttgtgcttagacaaccggactgaccctt-tactgcccttggtg 742
Query: 537 aatgtctgctacacaccttttgttctacttaactttctcactgtcaaagggctctctctg 596
||||| ||||||||||||||||| |||||||| ||||| |||||| |||| |||||||||
Sbjct: 743 aatgtttgctacacaccttttgtcctacttaagtttcttactgtctaaggcctctctctg 802
Query: 597 agtgc 601
|||||
Sbjct: 803 agtgc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1007
Length adjustment: 10
Effective length of query: 591
Effective length of database: 997
Effective search space: 589227
Effective search space used: 589227
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_p11.g1 MSMg01no537_p11.g1 CHROMAT_FILE:
MSMg01no537_p11.g1 PHD_FILE: MSMg01no537_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
(589 letters)
>mm_chr3_152991341_152992329
Length = 989
Score = 1009 bits (522), Expect = 0.0
Identities = 574/598 (95%), Gaps = 13/598 (2%)
Strand = Plus / Minus
Query: 1 tctcagatacataaagtgtgaaacagagtgtggggaagtcagagctctgaggtgagcatg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tctcaggtacataaagtgtgaaacagagtgtggggaagtcagagctctgaggtgagcatg 668
Query: 61 cctcgacagggagatgaagagccaggtttcagaagcctcgccatcagggcaggcatagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cctcgacagggagatgaagagccaggtttcagaagcctcgccatcagggcaggcatagga 608
Query: 121 aggcagctgtgagggaccctctgctctcccagcatccctcagtactcagacagcagcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aggcagctgtgagggaccctctgctctcccagcatccctcagtactcagacagcagcata 548
Query: 181 ctctgtcatgggcaaacagttcggctggagggagtcactagacatgattcaaccagtcgg 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctctgtcatgggcaaacagttcagctggagggagtcactagacatgattcaaccagtcgg 488
Query: 241 ccatcttcatgtggtcctttcctgggcatcctggagactgttcctttgtctaagaacgtg 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 487 ccatcttcatgtggtcctttcctgggcatcctggagactgttccttcgtctaagaacgtg 428
Query: 301 tcactggactgggtgctaacattcatccatgacgatatccttagaagatccctaccttca 360
|||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct: 427 tcactggactgggtgctaacattcatccataacgatatccttggaaggtccctaccttca 368
Query: 361 ttacctgtgtaaaggtctttattctgtataaggttgcactctgagactccaggttgacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttacctgtgtaaaggtctttattctgtataaggttgcactctgagactccaggttgacat 308
Query: 421 actatggacaaagaaggatggctgtacagctcactgtagtactgagcaagcaacagaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 actatggacaaagaaggatggctgtacagctcactgtagtactgagcaaacaacagaggg 248
Query: 481 aagagaatggatagccagtatagccagaattgatgggaaagacatgt------atg---- 530
||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 247 aagagaatggataaccagtatagccagaattgatgggaaagacatgtgtatacatgtata 188
Query: 531 --cctgtctgtcacgtatacattatgtgtatacatgcaagtccactgcattcaaaagt 586
| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 187 cacatgtctgtcacgtatacattatgcgtatacatgc-agtccacggcattcaaaagt 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
