Query= MSMg01no538_f14.b1 MSMg01no538_f14.b1 CHROMAT_FILE:
MSMg01no538_f14.b1 PHD_FILE: MSMg01no538_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:59 2005
(658 letters)
>mm_chr3_72845850_72846909
Length = 1060
Score = 1241 bits (642), Expect = 0.0
Identities = 652/656 (99%), Gaps = 2/656 (0%)
Strand = Plus / Plus
Query: 5 gaattccacatgtcaatggaccactttttcaacagtgagaagttatggacagcttgtgga 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatggcaatggaccactttttcaacagtgagaagttatggacagcttgtgga 264
Query: 65 ataaatctaccattaccaattgaaagtcaattcagtcaatattttgaatgctatgacaaa 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 ataaatctaccattaccaattgaaagtcaattcagtcaatattttggatgctatgacaaa 324
Query: 125 ggcaatgggtattgtagagaatgctgtacaaggtctaacactgtagcacttggctctgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcaatgggtattgtagagaatgctgtacaaggtctaacactgtagcacttggctctgaa 384
Query: 185 ttttcagatacatgctgatgctctttggtcaccagtgacttcactattataggtgctgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttcagatacatgctgatgctctttggtcaccagtgacttcactattataggtgctgag 444
Query: 245 ttttctcaccaaatgcaaatgacttcttcatagagagaacaggctgaattatgtcctagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttctcaccaaatgcaaatgacttcttcatagagagaacaggctgaattatgtcctagc 504
Query: 305 tttagagaaaagggaagggacccagatgttcagccatgaagctctgggctctcatcaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttagagaaaagggaagggacccagatgttcagccatgaagctctgggctctcatcaaac 564
Query: 365 --tggtttcacttcagcactgtctaagttcactgaaaaggcctttagtctcaagaaactt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actggtttcacttcagcactgtctaagttcactgaaaaggcctttagtctcaagaaactt 624
Query: 423 gaggacttgctcagagcctggcaatgatgtagggcagaccagactatcaggcattcttcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaggacttgctcagagcctggcaatgatgtagggcagaccagactatcaggcattcttcc 684
Query: 483 attcctccacagttagacaatactttcatttcaaacctatttttagaagccaggttttgg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attcctccacagttagacaatactttcatttcaaacctatttttagaagccaggttttgg 744
Query: 543 caactctttggtaagggaggtttagttctggtatgaaaactagctatagtcattgtgcta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caactctttggtaagggaggtttagttctggtatgaaaactagctatagtcattgtgcta 804
Query: 603 ttccttcattcaaatgtaataaagtgcaaacatcatgacttgacatattaccctta 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccttcattcaaatgtaataaagtgcaaacatcatgacttgacatattaccctta 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space: 680400
Effective search space used: 680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_f14.g1 MSMg01no538_f14.g1 CHROMAT_FILE:
MSMg01no538_f14.g1 PHD_FILE: MSMg01no538_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:59 2005
(542 letters)
>mm_chr3_73039238_73040179
Length = 942
Score = 818 bits (423), Expect = 0.0
Identities = 498/544 (91%), Gaps = 36/544 (6%)
Strand = Plus / Minus
Query: 1 aaggcaggatgataaaccgttcaaggttatcttcagtagctttgtgagatgaagaccaat 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 798 aaggcaggatgataaaccgttcaaggttatcctcagtagctttgtgagatgaagaccaat 739
Query: 61 atgggctatagaaggtaccatcccaataccctccaattactattattgttatcattatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atgggctatagaaggtaccatcccaataccctccaattactattattgttatcattatta 679
Query: 121 ttaacatactatatatatgtatatatgtatatatatatgtgtgtgtgtgtgtgtata--t 178
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |
Sbjct: 678 ttaacatactatatatatgtatata--tatatatatatgtgtgtgtgtgtatatatatgt 621
Query: 179 gtatgtatatgtatatatgtacacttaaaggtattttatgagttgattttanacattgag 238
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 gtatgtatatgtatatatgtatacttaaaggtattttatgagttgattttagacattgag 561
Query: 239 tcttgtcgctgaacccttatcaatactatcattgtcaggcactaaaaaaggatgccaaca 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttgttgctgaacccttatcaatactatcattgtcaggcactaaaaaaggatgccaaca 501
Query: 299 gaatatcttgattttattgtggaaaaaactctgaaccaatgtaattgattccattcttat 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaatgtcttgattttattgtggaaaaaactctgaaccaatgtaattgattccattcttat 441
Query: 359 ttctgcgcatcactacaaagattatgaaagcactggaattttacttcgtaaaatttctta 418
||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 ttctgcgcatcactacaaagattatgaaagcactg------------gt----------- 404
Query: 419 ccactggccaacttttcaaccatgaaaatttatcatttttatcccatgtgcccaaacaag 478
||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 403 --------caacttttcaaccatgaaaatttatcatttttatctcatgtgcccaaataag 352
Query: 479 ctttaactgtaagcttgacacagcacagacttaccatgaagggagactcagctaaggact 538
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 351 ctttaac-gtaagcttgacacagcacagatttaccatgaagggagactcagctaaggact 293
Query: 539 gatc 542
||||
Sbjct: 292 gatc 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
