BAC Information

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BAC

Clone NameMSMg01-538I16
Chromosome3 (Build37)
Map Location 34,808,114 - 34,972,048
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538I16.T7 (MSMg01no538_i16.b1)MSMg01-538I16.TJ (MSMg01no538_i16.g1)
ACCAG605245AG605246
length740739
length of high quality
(start - end)
631 (35 - 665)553 (65 - 617)
definitionCHROMAT_FILE: MSMg01no538_i16.b1 PHD_FILE: MSMg01no538_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:13 2005CHROMAT_FILE: MSMg01no538_i16.g1 PHD_FILE: MSMg01no538_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,808,114 - 34,808,749)(34,971,496 - 34,972,048)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGCA
CAATTAAGAAATCAAATGGGTCTAAAACTGCAGCCCCACACAACGCCTAC
ACGAGAAAAATGGAATCATAACCTCTACTTGAACCAGCCTCCCTCCCCTC
CTTATTCCTAAGGTAAGAAAAGAACTAAGCCAGCACGGCTGTCTGTTTCC
ATGTATCTGGCATGACTGTTTCATGCAAATGCCTTAACATTTTGAAGCCA
AGTCAACAGACCCTGGTTTATTGGCTGAACAGAGGATAAAGCAGCCATTG
GAAAATCAGCTTGGAAACACAGGGCAAATATATGAAAGAGGCAAGCCACA
GCTTGTATCAAAGAAAATGTAGAAAACTCCAGCATTACAGGTTTATCTAA
GGTGTGGTCTGGAGTAAGCCCCAGTAATTACCCAAGATTCCACAGCCAGT
AGCTGAAAAATGAGTTTCTTCACGGACTTAACCCTTTCCCCTGCCTCCGT
CAGCCTCTCACAGGAAGCACGCCACAGTTGGGTTTAGATTAGCCTGCAAG
AATTTCTTTCAGGCCTTGTCTCAGATTTAAGTCAAAGTTCTATACAATTT
GAGCCTCAGTTTCCCCAGTCTGGAGGTGAGCTGCCATCACCATGTCCCTA
GGAAGAACACTGTAGCTCTGCCCTTCTAGTTTTCATGACATAGGGAAACA
CTTCTTTCTCATTGAAACCATAAGAAGTATACCTAAGCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTCTGGGGTGGCTATCCAGTAGTGGCAGATAACAT
CTTGAGATGACTGTCATAGCTATGACCCTCACACATTTGGGCTGACTATC
CATCTGAAAATATGGCTCCTGACACCTGCCCTGAAATATTTAAAAGGAGC
AAGGACAGAACTGGGGGTGGGGGCATGAGATCCTTTTCTCTGTGGTGTAA
CAGAAAGAAACAACCAAGTATAAACCACGCCGGCAACACCAACATTCTAA
TGACCAAGCGCTGTCTGGCTAGAGATATGGAAAATTCTTCCCGTGATAAA
TTTTTAACAGTGAAATCTGACTTGCCTCTTGTGCTCCATTGCCCTAAATG
CATTTTGGAAACAAGGGGAGCATCAATAAATAAATAGTCGACTCTTCCCT
TGGTGTTTGGGGGCAAGCAGATGGTGAATGAGAGGACAGGGGTGAAGGTG
TTGTGTCCTGTTAGCAGGGTGTGGGGAAGTTGGGAAGCCATGCTCCCCCT
GGCCGGCCTCCTTCCTCTGGTGTTCTTTCTTGGACTCACTCCTCTGTCCA
CTCCTGTATGGAGTTCCTTGATGTATGCTGGCCTCTGCTTTGACTTGAGA
GAGGGTTCCTTGGTGCTATTTCCTTCCTCTCCTTGAGTCCATCTTCTTGG
TGATACTCATGGAGTTTTGTTGNTGGTATTGGTGGTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_i16.b1 MSMg01no538_i16.b1 CHROMAT_FILE:
MSMg01no538_i16.b1 PHD_FILE: MSMg01no538_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:13 2005
         (631 letters)



>mm_chr3_34807919_34808949
          Length = 1031

 Score = 1122 bits (580), Expect = 0.0
 Identities = 618/636 (97%), Gaps = 9/636 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgcacaattaagaaatcaaatgggtctaaaactgcagccccacacaacgcct 64
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 196 gaattcaatgcacatttaagaaatcaaatgggtctaaaactggagccccacacaacgcct 255

                                                                       
Query: 65  acacgagaaaaatggaatcataacctctacttgaaccagcctccctcccctccttattcc 124
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 256 acacgaaaaaaatggaatcataacctctacttgaaccagcctccctcctctccttattcc 315

                                                                       
Query: 125 taaggtaagaaaagaactaagccagcacggctgtctg---------tttccatgtatctg 175
           ||||||| |||||||||||||||||||||||||||||         ||||||||||||||
Sbjct: 316 taaggtaggaaaagaactaagccagcacggctgtctgggctgtctgtttccatgtatctg 375

                                                                       
Query: 176 gcatgactgtttcatgcaaatgccttaacattttgaagccaagtcaacagaccctggttt 235
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 376 gcatgactgtttcatgcaaatgccttaacattctgaaaccaagtcaacagaccctggttt 435

                                                                       
Query: 236 attggctgaacagaggataaagcagccattggaaaatcagcttggaaacacagggcaaat 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attggctgaacagaggataaagcagccattggaaaatcagcttggaaacacagggcaaat 495

                                                                       
Query: 296 atatgaaagaggcaagccacagcttgtatcaaagaaaatgtagaaaactccagcattaca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atatgaaagaggcaagccacagcttgtatcaaagaaaatgtagaaaactccagcattaca 555

                                                                       
Query: 356 ggtttatctaaggtgtggtctggagtaagccccagtaattacccaagattccacagccag 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggtttatctaaggtgtggtctggagtaagccccagtaattacccaagattccacagccag 615

                                                                       
Query: 416 tagctgaaaaatgagtttcttcacggacttaaccctttcccctgcctccgtcagcctctc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tagctgaaaaatgagtttcttcacggacttaaccctttcccctgcctccgtcagcctctc 675

                                                                       
Query: 476 acaggaagcacgccacagttgggtttagattagcctgcaagaatttctttcaggccttgt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acaggaagcacgccacagttgggtttagattagcctgcaagaatttctttcaggccttgt 735

                                                                       
Query: 536 ctcagatttaagtcaaagttctatacaatttgagcctcagtttccccagtctggaggtga 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagatttaagtcaaagttctatacaatttgagcctcagtttccccagtctggaggtga 795

                                               
Query: 596 gctgccatcaccatgtccctaggaagaacactgtag 631
           ||||||||||||||||||| |||| |||||||||||
Sbjct: 796 gctgccatcaccatgtccccaggaggaacactgtag 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no538_i16.g1 MSMg01no538_i16.g1 CHROMAT_FILE:
MSMg01no538_i16.g1 PHD_FILE: MSMg01no538_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:13 2005
         (553 letters)



>mm_chr3_34971296_34972248
          Length = 953

 Score = 1038 bits (537), Expect = 0.0
 Identities = 549/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctggggtggctatccagtagtggcagataacatcttgagatgactgtcatagctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cctctggggtggctatccagtagtggcagataacatcttgagatgactgtcatagctatg 694

                                                                       
Query: 61  accctcacacatttgggctgactatccatctgaaaatatggctcctgacacctgccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 accctcacacatttgggctgactatccatctgaaaatatggctcctgacacctgccctga 634

                                                                       
Query: 121 aatatttaaaaggagcaaggacagaactgggggtgggggcatgagatccttttctctgtg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aatatttaaaaggatcaaggacagaactgggggtgggggcatgagatccttttctctgtg 574

                                                                       
Query: 181 gtgtaacagaaagaaacaaccaagtataaaccacgccggcaacaccaacattctaatgac 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 gtgtaacagaaagaaacaaccaagtataaaccgcgccggcaacaccaacattctaatgac 514

                                                                       
Query: 241 caagcgctgtctggctagagatatggaaaattcttcccgtgataaatttttaacagtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caagcgctgtctggctagagatatggaaaattcttcccgtgataaatttttaacagtgaa 454

                                                                       
Query: 301 atctgacttgcctcttgtgctccattgccctaaatgcattttggaaacaaggggagcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atctgacttgcctcttgtgctccattgccctaaatgcattttggaaacaaggggagcatc 394

                                                                       
Query: 361 aataaataaatagtcgactcttcccttggtgtttgggggcaagcagatggtgaatgagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aataaataaatagtcgactcttcccttggtgtttgggggcaagcagatggtgaatgagag 334

                                                                       
Query: 421 gacaggggtgaaggtgttgtgtcctgttagcagggtgtggggaagttgggaagccatgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gacaggggtgaaggtgttgtgtcctgttagcagggtgtggggaagttgggaagccatgct 274

                                                                       
Query: 481 ccccctggccggcctccttcctctggtgttctttcttggactcactcctctgtccactcc 540
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 273 ccccctggccggcctccttcctctgttgttctttcttgtactcactcctctgtccactcc 214

                        
Query: 541 tgtatggagttcc 553
           |||||||||||||
Sbjct: 213 tgtatggagttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)