Query= MSMg01no538_i16.b1 MSMg01no538_i16.b1 CHROMAT_FILE:
MSMg01no538_i16.b1 PHD_FILE: MSMg01no538_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:13 2005
(631 letters)
>mm_chr3_34807919_34808949
Length = 1031
Score = 1122 bits (580), Expect = 0.0
Identities = 618/636 (97%), Gaps = 9/636 (1%)
Strand = Plus / Plus
Query: 5 gaattcaatgcacaattaagaaatcaaatgggtctaaaactgcagccccacacaacgcct 64
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 196 gaattcaatgcacatttaagaaatcaaatgggtctaaaactggagccccacacaacgcct 255
Query: 65 acacgagaaaaatggaatcataacctctacttgaaccagcctccctcccctccttattcc 124
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 256 acacgaaaaaaatggaatcataacctctacttgaaccagcctccctcctctccttattcc 315
Query: 125 taaggtaagaaaagaactaagccagcacggctgtctg---------tttccatgtatctg 175
||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 316 taaggtaggaaaagaactaagccagcacggctgtctgggctgtctgtttccatgtatctg 375
Query: 176 gcatgactgtttcatgcaaatgccttaacattttgaagccaagtcaacagaccctggttt 235
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 376 gcatgactgtttcatgcaaatgccttaacattctgaaaccaagtcaacagaccctggttt 435
Query: 236 attggctgaacagaggataaagcagccattggaaaatcagcttggaaacacagggcaaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attggctgaacagaggataaagcagccattggaaaatcagcttggaaacacagggcaaat 495
Query: 296 atatgaaagaggcaagccacagcttgtatcaaagaaaatgtagaaaactccagcattaca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atatgaaagaggcaagccacagcttgtatcaaagaaaatgtagaaaactccagcattaca 555
Query: 356 ggtttatctaaggtgtggtctggagtaagccccagtaattacccaagattccacagccag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggtttatctaaggtgtggtctggagtaagccccagtaattacccaagattccacagccag 615
Query: 416 tagctgaaaaatgagtttcttcacggacttaaccctttcccctgcctccgtcagcctctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tagctgaaaaatgagtttcttcacggacttaaccctttcccctgcctccgtcagcctctc 675
Query: 476 acaggaagcacgccacagttgggtttagattagcctgcaagaatttctttcaggccttgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acaggaagcacgccacagttgggtttagattagcctgcaagaatttctttcaggccttgt 735
Query: 536 ctcagatttaagtcaaagttctatacaatttgagcctcagtttccccagtctggaggtga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagatttaagtcaaagttctatacaatttgagcctcagtttccccagtctggaggtga 795
Query: 596 gctgccatcaccatgtccctaggaagaacactgtag 631
||||||||||||||||||| |||| |||||||||||
Sbjct: 796 gctgccatcaccatgtccccaggaggaacactgtag 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_i16.g1 MSMg01no538_i16.g1 CHROMAT_FILE:
MSMg01no538_i16.g1 PHD_FILE: MSMg01no538_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:13 2005
(553 letters)
>mm_chr3_34971296_34972248
Length = 953
Score = 1038 bits (537), Expect = 0.0
Identities = 549/553 (99%)
Strand = Plus / Minus
Query: 1 cctctggggtggctatccagtagtggcagataacatcttgagatgactgtcatagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cctctggggtggctatccagtagtggcagataacatcttgagatgactgtcatagctatg 694
Query: 61 accctcacacatttgggctgactatccatctgaaaatatggctcctgacacctgccctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 accctcacacatttgggctgactatccatctgaaaatatggctcctgacacctgccctga 634
Query: 121 aatatttaaaaggagcaaggacagaactgggggtgggggcatgagatccttttctctgtg 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aatatttaaaaggatcaaggacagaactgggggtgggggcatgagatccttttctctgtg 574
Query: 181 gtgtaacagaaagaaacaaccaagtataaaccacgccggcaacaccaacattctaatgac 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 573 gtgtaacagaaagaaacaaccaagtataaaccgcgccggcaacaccaacattctaatgac 514
Query: 241 caagcgctgtctggctagagatatggaaaattcttcccgtgataaatttttaacagtgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caagcgctgtctggctagagatatggaaaattcttcccgtgataaatttttaacagtgaa 454
Query: 301 atctgacttgcctcttgtgctccattgccctaaatgcattttggaaacaaggggagcatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atctgacttgcctcttgtgctccattgccctaaatgcattttggaaacaaggggagcatc 394
Query: 361 aataaataaatagtcgactcttcccttggtgtttgggggcaagcagatggtgaatgagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aataaataaatagtcgactcttcccttggtgtttgggggcaagcagatggtgaatgagag 334
Query: 421 gacaggggtgaaggtgttgtgtcctgttagcagggtgtggggaagttgggaagccatgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gacaggggtgaaggtgttgtgtcctgttagcagggtgtggggaagttgggaagccatgct 274
Query: 481 ccccctggccggcctccttcctctggtgttctttcttggactcactcctctgtccactcc 540
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 273 ccccctggccggcctccttcctctgttgttctttcttgtactcactcctctgtccactcc 214
Query: 541 tgtatggagttcc 553
|||||||||||||
Sbjct: 213 tgtatggagttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
