BAC Information

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BAC

Clone NameMSMg01-538J02
Chromosome3 (Build37)
Map Location 94,581,340 - 94,581,961
singlet/doubletsinglet
Overlap geneCgn
Upstream geneTdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801
Downstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538J02.T7 (MSMg01no538_j02.b1)MSMg01-538J02.TJ (MSMg01no538_j02.g1)
ACCAG605265AG605266
length736739
length of high quality
(start - end)
688 (37 - 724)620 (66 - 685)
definitionCHROMAT_FILE: MSMg01no538_j02.b1 PHD_FILE: MSMg01no538_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:15 2005CHROMAT_FILE: MSMg01no538_j02.g1 PHD_FILE: MSMg01no538_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAT
GGACTCATCCACTCTCAGTCTAGGAGGGAAAAGCCAGGTCATCCACATCT
TTCCCTTCTGGCCAACCTGTAATGTGGTAAAAATAAGATTACTGAGCATG
TTCTTAAACACCAGACCTTCCCTCCTCCCTTCCTCTTTTCCTTCCTTTTC
TTCCTTTCCTTCCTTCCCCCTTCCTCCCTTTTTTCTTTTTCTTTTCTTTT
TTTCTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC
TCACTCTGTGGACCAGGCTGACCTCAAACTCACAGAGATTCGCCTGCTTC
TGCCTCCCAAGGGCTGGGATTAAAGGCTTGCGCCACCACACCTAGCTATT
TATTTTATGATTAATGTTTATCATTTATTTTTGCACCTGTGTGTGCAGTG
TACAGAGTAGCCCAGAGGACGTCAGATCCCCTGGAGCTGGAGTTACAGGT
TGTGAGCCGCCCCCGACCCTGTGTGGATGCTGAGATCTGAATTCCAGCCC
TCATGATGCAGCAGCCACTGCTCTTAACCGCTGAGTCATCTTTCTTGTCC
TGAATTTATTTCTTTTTGAGACAGGATATTGTGAAGCCCAGGCTGTCCTC
AAACCCCATAGATGGTTTAGGCTAGCCTTGAACTACAGATCTTCCTGCCT
CTACCTCTCCCAAATGGATTACAGGTATATACCATT
GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTCCTGTCTCTACTTCCTGGGTGCTGGGC
TTACAGACAAGGACAACCATGATTGGTGGCATTCAGTACTAGGGATTGAA
CCCAGAACTTGACACATGTAAGGCAAGCTTTCTATCAACTGAGCTACATA
CACCACCAGACGGAGAACGAAAGCAAGTTTCTCGGGCTTTATATAAGCAG
TAAATAGCAAGCCCGAGATAGGGACTCCTAGGGAAAATGAGAAGGAAGTA
GTTAGATCTCCAATGTGCTCCACCCATCTTGGATCCAGAGAAACTCAAAG
TCCTTGCTGGGACGAGGACACTGACTTCTTCTTGTCTCACATAATACAGA
CAGTACTTGTCCTACTACATAGAAGAGCCCAGCCCAGCAAGGCATGGTGG
CATGTGCCTTTGATTCCAGCAGAGTGAGGAAGATTCACTCTGGGCTTTGA
ATTAAGCCCAGCCAGATATAGTCAGTCACTCAGTAAGACACCCTGTCTCA
AAAAAAAAAGCCAGCCAGCCTCGTCCATCCCCAGGAAAGGCTAGTGGCAT
CTTCCCTGTCGTCCTCATCCCTCCCGTAACCAGCCTCACCTTCACCTCCT
CATCCAGCTTCTTCTGAAGTTCCTCCATTTTTCGGGTAAACTCAGCCTGT
CCTGCCAGGGCCTTGGTAGAAGCAGGAGAAACCATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_j02.g1 MSMg01no538_j02.g1 CHROMAT_FILE:
MSMg01no538_j02.g1 PHD_FILE: MSMg01no538_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:15 2005
         (620 letters)



>mm_chr3_94581142_94582161
          Length = 1020

 Score = 1137 bits (588), Expect = 0.0
 Identities = 613/622 (98%), Gaps = 2/622 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatcttcctgtctctacttcctgggtgctgggcttacagacaaggacaaccatgattg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 199 ctgatcttcctgtctctacttcctgggtgctgggcttacaggcaaggacaaccatgattg 258

                                                                       
Query: 61  gtggcattcagtactagggattgaacccagaacttgacacatgtaaggcaagctttctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 gtggcattcagtactagggattgaacccagaacttgacacatgtaaggcaagcattctat 318

                                                                       
Query: 121 caactgagctacatacaccaccagacggagaacgaaagcaagtttctcgggctttatata 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 caactgagctacatacaccaccagacggagaacgaaagcaagtttctcaggctttatata 378

                                                                       
Query: 181 agcagtaaatagcaagcccgagatagggactcctagggaaaatgagaaggaagtagttag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcagtaaatagcaagcctgagatagggactcctagggaaaatgagaaggaagtagttag 438

                                                                       
Query: 241 atctccaatgtgctccacccatcttggatccagagaaactcaaagtccttgctgggacga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atctccaatgtgctccacccatcttggatccagagaaactcaaagtccttgctgggacga 498

                                                                       
Query: 301 ggacactgacttcttcttgtctcacataatacagacagtacttgtcctactacatagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggacactgacttcttcttgtctcacataatacagacagtacttgtcctactacatagaag 558

                                                                       
Query: 361 agcccagcccagcaaggcatggtggcatgtgcctttgattccagcagagtgaggaagatt 420
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 559 agcccagcccaggaaggcatggtggcacgtgcctttgattccagcagagtgaggaagatt 618

                                                                       
Query: 421 cactctgggctttgaattaagcccagccagatatagtcagtcactcagtaagacaccctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cactctgggctttgaattaagcccagccagatatagtcagtcactcagtaagacaccctg 678

                                                                       
Query: 481 tctcaaaaaaaaaag--ccagccagcctcgtccatccccaggaaaggctagtggcatctt 538
           |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 679 tctcaaaaaaaaaagagccagccagcctcgtccatccccaggaaaggctagcggcatctt 738

                                                                       
Query: 539 ccctgtcgtcctcatccctcccgtaaccagcctcaccttcacctcctcatccagcttctt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccctgtcgtcctcatccctcccgtaaccagcctcaccttcacctcctcatccagcttctt 798

                                 
Query: 599 ctgaagttcctccatttttcgg 620
           ||||||||||||||||||||||
Sbjct: 799 ctgaagttcctccatttttcgg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)