Query= MSMg01no538_j05.b1 MSMg01no538_j05.b1 CHROMAT_FILE:
MSMg01no538_j05.b1 PHD_FILE: MSMg01no538_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:15 2005
(649 letters)
>mm_chr3_72292665_72293713
Length = 1049
Score = 1245 bits (644), Expect = 0.0
Identities = 644/644 (100%)
Strand = Plus / Plus
Query: 5 gaattccatgttttcaagaccatgcattaacatttctgccaccaaaaccatgttgttcgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgttttcaagaccatgcattaacatttctgccaccaaaaccatgttgttcgt 264
Query: 65 aggtttattgggcagtgacaggaatgcctgggacaagattgactgtcagcagaataggtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtttattgggcagtgacaggaatgcctgggacaagattgactgtcagcagaataggtc 324
Query: 125 atcctatctgctggattattattgaactcctcatcttctgatatgcattcccatatggca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcctatctgctggattattattgaactcctcatcttctgatatgcattcccatatggca 384
Query: 185 aacatcttcatatcattcacccacttgggaagatccatccatatgatacttcttcaaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacatcttcatatcattcacccacttgggaagatccatccatatgatacttcttcaaatg 444
Query: 245 tctttcttaccagtttcttaatcatgcctcttcatattcctgactaaggagtcaatccat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttcttaccagtttcttaatcatgcctcttcatattcctgactaaggagtcaatccat 504
Query: 305 tgggtacaacttatgagtaggtaaacaatgatacatctagccatttccaatcagcataat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggtacaacttatgagtaggtaaacaatgatacatctagccatttccaatcagcataat 564
Query: 365 gtcatcaatatagtagacccattggaaattttgtggaaaagacaatctattaagatccct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcatcaatatagtagacccattggaaattttgtggaaaagacaatctattaagatccct 624
Query: 425 taaactaagtaatgacacagggataaagagtcaatatactttttagttaaaatcatcatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaactaagtaatgacacagggataaagagtcaatatactttttagttaaaatcatcatt 684
Query: 485 agaacagtttcagccagcaagtgatgggaggagttgcaaaaacaaactgtcaaacattaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaacagtttcagccagcaagtgatgggaggagttgcaaaaacaaactgtcaaacattaa 744
Query: 545 aaagagattgagagatgccatgtaatagaaaatgaatgattatagaaactagaaggtttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagagattgagagatgccatgtaatagaaaatgaatgattatagaaactagaaggtttg 804
Query: 605 aagacacaatgagaacatgacccacagagtcaaataagcagggc 648
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagacacaatgagaacatgacccacagagtcaaataagcagggc 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_j05.g1 MSMg01no538_j05.g1 CHROMAT_FILE:
MSMg01no538_j05.g1 PHD_FILE: MSMg01no538_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:15 2005
(620 letters)
>mm_chr3_72460973_72461992
Length = 1020
Score = 1100 bits (569), Expect = 0.0
Identities = 608/621 (97%), Gaps = 2/621 (0%)
Strand = Plus / Minus
Query: 1 cagtgcccagatttttatgctaattgctttatctattgagtcatctataagaacctccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cagtgcccagatttttatgctaattgctttatctattgagtcatctataagaacctccat 580
Query: 61 tattagaaattatttcatcttaatacaagaaagaaatttaaatagtttaactattttccc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tactagaaattatttcatcttaatacaagaaagaaatttaaatagtttaactattttccc 520
Query: 121 attttttttgtcaggaagcttgattataaatagtctgatctaatattctggttgttcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 attttttttgtcaggaagcttgattataaatagtctgatctaatattctggttgttcaat 460
Query: 181 aatattttaaatccaatatcattaattcctgtcaaaaattacctttgaaagaaccccaga 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aatattttaaatcccatatcattaattcctgtcaaaaattacctttgaaagaaccccaga 400
Query: 241 cttttcactcttatatgcagaatatctctagaatgtgaataaatgtactcactttgtaat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cttttcgctcttatatgcagaatatctctagaatgtgaataaatgtactcactttgtaat 340
Query: 301 tccagcaaggttatactgttttaatgtacagaagatcagggcacatgaagctatacacag 360
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 339 tccagcaaggttatactgtttttacgtacagaagatcagggcacatgaagctatacacag 280
Query: 361 ccaatttttgatgattttgttttctcaacaatattgaattatatatatgccaatcttcta 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccaatttttgatgatttttttttctcaacaatattgaattatatatatgccaatcttcta 220
Query: 421 ctgcacttccaaactttgcatcagggactagacaagggtgtccactctggccctacctat 480
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 219 ctgcacttccaaactttgcatcagggactagacaaggctgtccactctcgccctacctat 160
Query: 481 tcaacattgtacttgaagtcctagacagagcaatt-agacaacaaaaggagatcaagggg 539
|||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct: 159 tcaacattgtacttgaagtcctagccagagcaattca-acaacaaaaggagatcaagggg 101
Query: 540 atacaaattggaaaaggaagaagtcaaaatatcactttttgcagatgatatgatagaata 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 100 atacaaattggaaaaggaagaagtcaaaatatcactttttgcagatgatatgatagtata 41
Query: 600 tatacgtgaccctaaaaattc 620
||||||||||||||| |||||
Sbjct: 40 tatacgtgaccctaagaattc 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
