BAC Information

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BAC

Clone NameMSMg01-538L14
Chromosome3 (Build37)
Map Location 17,136,828 - 17,137,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936
Downstream geneLOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538L14.T7 (MSMg01no538_l14.b1)MSMg01-538L14.TJ (MSMg01no538_l14.g1)
ACCAG605385AG605386
length733729
length of high quality
(start - end)		515 (38 - 552)487 (67 - 553)
definitionCHROMAT_FILE: MSMg01no538_l14.b1 PHD_FILE: MSMg01no538_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:26 2005CHROMAT_FILE: MSMg01no538_l14.g1 PHD_FILE: MSMg01no538_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
GTCTTTATACTGTATATGTTTCAAACCATGACACAATCAGAAGGGATCTT
CGAAGGCCTACAGCTTTATGCATCCACACAGTTTCAATCATTGCAAACAT
TCCTTTTTCCTTGGGCAAACCCTTCCTGCCAATCTGAAGACAACCTTTTC
TGGAGGAGAAGAGAGCTTGCTTCCATTTCTGACTCACTCAAGGTGAAACA
GAAATGTTTCTCTTTTATCTTCTATTTCTATATTTCATTTTTATTTTTCT
TTATGTATCACAACAAAACCACAGCACACTAAATATTATTCTTAAACCCA
CAGAAAACTAAAGATCTTAGCACATAACAAGGAAACTTCTCTTTCCAACA
GGCAGAGGTCATTACAAAAGTCATAACTGATGAAACTGGAGATAACAAGT
GTTATGCAGTTCCCAGCTTTAAGTGATACATGTATAACACACCTCCTGCA
TCTTAGGTTTAAGGAACATCACCAAAAAAAAGGCAAAAATATTTTAAGAG
CTAGAGGACCAGGATGAAGTCTGTGAAATTGTATCTCCTCAAAATTTCAA
GAATGTTTCTGTTATGATACCTCAATAATATGGCTATGGAAACAAGACTG
GAGGAAATAGATCATCCAAACAAATGAATACATGTAAGTGAGAATTCCAT
CCATTGACAAAGAACTATATTAATGTGTGCAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCACAAAACCCAATTAGTCCTGGGCCTTTTTCT
GGGTGGGAGACTATTAATTACTGCTTCTATTTATTTAGGGATTATAAGCC
TATTTAGATGGTTTAACTGATCCTGTTTTAACTTTGGCACCAGGTAAGTG
TCTAGAAAATTGTCCATTTCATCCAGATTTTCCAATCTAGTTAAGTATAA
ATTTTCTTAGTAGTATCTGATGATTTTCTGGATTTCCACAATTTCCTTTG
TTATCGTCTCACTTTTCATTTCTGATTCTATTAATTTGGATACTGTCTCT
GTACCCTCTTGTTAATCTGGTTAAAAGTTTATCTATATTGTTGATTTTCT
TTAAGAAACAGCTTCTAGTTTTGTCAATGCTTTGTATAGCTCTTTTTGTT
TCTATTTGGTTTTTATTTAATTTCTGGCATAAGCTTGAATATTTCCTTCA
GTCTACTCTTCTTGGGTGTATTTGCTTTNTTTTTTTTTTTTTTTTTTTGG
TCTAGAGCTTTCAGGTGTGTTGTCAAATTGCTAATGGATGTTCTCTCCAG
TTTCCTTTTGTAAGCATGTAGAGCTAGAAATTTCCCTCTTAACCACTGCT
TTCATTGTGTCCGATAGGGTCTGGGATGGGCTGGCCTTATTGGTATTAAA
ATCCAAAAAGGTTTTAATTTCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_l14.b1 MSMg01no538_l14.b1 CHROMAT_FILE:
MSMg01no538_l14.b1 PHD_FILE: MSMg01no538_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:26 2005
         (515 letters)



>mm_chr3_17136624_17137537
          Length = 914

 Score =  934 bits (483), Expect = 0.0
 Identities = 504/511 (98%), Gaps = 1/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtctttatactgtatatgtttcaaaccatgacacaatcagaagggatcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtctttatactgtatatgtttcaaaccatgacacaatcagaagggatcttc 264

                                                                       
Query: 65  gaaggcctacagctttatgcatccacacagtttcaatcattgcaaacattcctttttcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaggcctacagctttatgcatccacacagtttcaatcattgcaaacattcctttttcct 324

                                                                       
Query: 125 tgggcaaacccttcctgccaatctgaagacaaccttttctggaggagaagagagcttgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggcaaacccttcctgccaatctgaagacaaccttttctggaggagaagagagcttgct 384

                                                                       
Query: 185 tccatttctgactcactcaaggtgaaacagaaatgtttctcttttatcttctatttctat 244
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 385 tccatttctgactcactcaaggtgaaccagaaatgtttctcttttgtcttctatttctat 444

                                                                       
Query: 245 atttcatttttatttttctttatgtatcacaacaaaaccacagcacactaaatattattc 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 atttcatttttatttttctttatgtatcacaa-aaaaccacagcacactaaatattattc 503

                                                                       
Query: 305 ttaaacccacagaaaactaaagatcttagcacataacaaggaaacttctctttccaacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaaacccacagaaaactaaagatcttagcacataacaaggaaacttctctttccaacag 563

                                                                       
Query: 365 gcagaggtcattacaaaagtcataactgatgaaactggagataacaagtgttatgcagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcagaggtcattacaaaagtcataactgatgaaactggagataacaagtgttatgcagtt 623

                                                                       
Query: 425 cccagctttaagtgatacatgtataacacacctcctgcatcttaggtttaaggaacatca 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 cccagctttaagtgatacatgtataacacatctcctgcatcttaggtttaaggaacatca 683

                                          
Query: 485 ccaaaaaaaaggcaaaaatattttaagagct 515
           || || | |||||||||||||||||||||||
Sbjct: 684 ccgaagacaaggcaaaaatattttaagagct 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space:   456520
Effective search space used:   456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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