Query= MSMg01no538_n12.b1 MSMg01no538_n12.b1 CHROMAT_FILE:
MSMg01no538_n12.b1 PHD_FILE: MSMg01no538_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:35 2005
(621 letters)
>mm_chr3_57726629_57727650
Length = 1022
Score = 1180 bits (610), Expect = 0.0
Identities = 616/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 5 gaattccctgtgtgtcttctttctcttttccttttccttcttctccatgtcatcaaaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgtgtgtcttctttctcttttccttttccttcttctccatgtcatcaaaaag 264
Query: 65 atggacatgtttgctagggcaaacccggctagggtgaggggctggggagtggctgtgctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggacatgtttgctagggcaaacccggctagggtgaggggctggggagtggctgtgctg 324
Query: 125 ttaaaggcagaggcctcattagtgaaggctggcaagaatgtacattcactgaaaaactac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaaggcagaggcctcattagtgaaggctggcaagaatgtacattcactgaaaaactac 384
Query: 185 atcacatggacaatgcacaagagaaccgatttggggacactagtccttaatgtctttttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcacatggacaatgcacaagagaaccgatttggggacactagtccttaatgtctttttg 444
Query: 245 tccagtgaaaattcagagcctgcacggatttcctagacaatttgtccaaccaaatcattc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccagtgaaaattcagagcctgcacggatttcctagacaatttgtccaaccaaatcattc 504
Query: 305 agcttaataacagggcacagagaacagaatgattccagggtgatgcaaaatgctacctaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcttaataacagggcacagagaacagaatgattccagggtgatgcaaaatgctacctaa 564
Query: 365 tttacaaagcacagggctttcagttcctcttatgtactccaattgtacttaaaggtattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttacaaagcacagggctttcagttcctcttatgtactccaattgtacttaaaggtattt 624
Query: 425 tgttatagaacacttgaaaaaatacttgaaaaatcaataaagattcctgagcatggtggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttatagaacacttgaaaaaatacttgaaaaatcaataaagattcctgagcatggtggc 684
Query: 485 ttccagtgcttcacagggatggaaacaatgtgttcttatattcacgtttgtgtgagattt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttccagtgcttcacagggatggaaacaatgtgttcttatattcacgtttgtgtgagattt 744
Query: 545 tttaaaagtaatatttgtgtatcttttttttt-gaaagaccccaaaatgtatgtcagcta 603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 745 tttaaaagtaatatttgtgtatcttttttttttgaaagaccccaaaatgtatgtcagcta 804
Query: 604 cttttctgttgctgtgac 621
||||||||||| ||||||
Sbjct: 805 cttttctgttgttgtgac 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_n12.g1 MSMg01no538_n12.g1 CHROMAT_FILE:
MSMg01no538_n12.g1 PHD_FILE: MSMg01no538_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:35 2005
(635 letters)
>mm_chr3_57861734_57862770
Length = 1037
Score = 1122 bits (580), Expect = 0.0
Identities = 623/638 (97%), Gaps = 4/638 (0%)
Strand = Plus / Minus
Query: 1 actcttttataaacgaattggttggagattcttattcttctatttttcagtgtttttgag 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 837 actcttttataaacgaattggttggagattcttattcttttatttttcagtgtttttgag 778
Query: 61 agtctgctgctgttctgctttcagacgctctctgacatggcttttcccatgagacatttt 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 777 agtctgctgctgttctgctttcagacgctctctgatgtggcttttcccatgagacatttt 718
Query: 121 ggagacacgtggagaacgctggtggagaatttcccaccaaattttagagacagtagtgct 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ggagacacgtggagaacactggtggagaatttcccaccaaattttagagacagtagtgct 658
Query: 181 ataatgaggaagggccagagtggataaa--agcaagaagggaagggaagaaggtcagcat 238
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 657 ataatgaggaagggccagagtggataaaagagcaagaagggaagggaagaaggtcagcat 598
Query: 239 tgcggatacagtcctctccagccacggcagggcagctgagcatgcgccttcacagccatg 298
||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 597 tgcagatacagtcctctccagtcatggcagggcagccgagcatgcgccttcacagccatg 538
Query: 299 gtaaccgcacacaaaagacttcagccagtctaacgcccaacatggggcggggagtgggta 358
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 537 gtaaccgcacacaaaagacttcagacagtctaacgcccagcatggggcggggagtgggta 478
Query: 359 aggaat-ccatggactagctgaggagccacgggcattcgatagcagctaggtgacgggaa 417
|||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 477 aggaatccca-ggactagctgaggagccaccggcattcgatagcagctaggtgacgggaa 419
Query: 418 gtcccattccttgactgatatgacccctagtatatcagaccacatgccagggcaaaaccc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtcccattccttgactgatatgacccctagtatatcagaccacatgccagggcaaaaccc 359
Query: 478 aggactagctgcacaaggtaaactggagttcacgaggaacgaaaaaaaatttgcagagtt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aggactagctgcacaaggtaaactggagttcacgaggaacgaaaaaaaatttgcagagtt 299
Query: 538 gagtgggaaggaatggagggatggaagggtggaaaggtcgcatatgaaaatagtcgaggg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gagtgggaaggaatggagggatggaagggtggaaaggtcgcatatgaaaatagtcgaggg 239
Query: 598 agggggaatgaatttgttcaaaatacattgagtgaaat 635
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agggggaatgaatttgttcaaaatacattgagtgaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1037
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1027
Effective search space: 641875
Effective search space used: 641875
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
