TCAATCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTTTTTCGAGGCTATAGGACTAAGGTCCCTATACT
TTGGCTGGCTGTTGTTCAGGGGTTGTTCTCAGCCCCCAGAGGCTCCTCGG
TCCCCTCCACATGGACTTCCCCCAGACCCACTTCCAGCTTAGCAGCTGCC
TTCCTCAGGGCCAACTGGGGAGCTTTCTGACCTCAGGGAGCAGCTGGACT
GGTCTCTGGAAGATTTTCGGTTAATGAAGTCAGGCCTAGGCAAGATAATC
TTCCTGTTGATTAACTCAGAGTCAACTGGTTTGGGAAGTTAATTATATCT
GCAACATCCCTTCACCTTGCCTGTGTTCTATTGGCTAGAAGCAAGTCACA
AGTTCTGGCTGCCCTCAAGAGAGGGTGTCTACCAGAGCACGATTCAGCAG
GGTCACCACTGGGTGTGTCTACACCCTGGGGATGGGCAGACTCCTACAGG
AGCATAGTAAATCCAGGGACCAGCTGGGGCCACCAGTCTGTTAGGCACCC
TGCCGCTGATTGACACAGTGTACTTTCATGGCCACCACATGGCATCCTCC
ACTCCATAATTCACGGACTACCTCCTTTGGTGTCTGTCTACCCAATTGGA
ATACAAGTTCAGAGGAGGCACCGAAAATATCTGTCTTGGCCGTGTTCTAC
TGTTAGGCACAATGCTTTTTGTATGACCTGGAN

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTTGCTAAAAATAGA
CAGTACACAGTAGTAAGTGTCACTAAAACCAGAAGTACTGCAAAGAAAAG
ATCTATTTCAGAGTTAAACTCAAAGGTCTGTGTTGTAAAATATTTGGTCT
TTGTTATTCTCTCAACACTCAATTTGGAAAGAGAAACATGCTCCAGTTTG
GGTAATTAACCAGTAACATAAGTCAAATAATGAATTCTGCTACCTCCTAA
ATACATCTGAACAGATTACCAAGTCTTTCAAAGCAATTTCAAAGCGGCAC
TGCAGCCTTGCAGGAGCTGAGAGACAGGAAATGCATGTTGACACGTGCAG
CTCGGGCAGCTTCCAGGCGGCTGCATAGAGGAGCTCACAGAGGAGCTGCA
GCCAGTCCTTGGAGCAGGACTAGACAGCGCCCAAACCAAAATGTTTAAGG
CTGCTCAGAAACAAAGATGTGAGGAAGGAAATAGCAGAGAGGAGTTACAA
AAGCCTTGCTCTTTTGTCAAGTATGCAATTATAGAAAAAAAAAAAAAGTC
TTCCTGGAAGTCTACATATAAGAATGCCAGCCCTTTCCCTCTCTGCCGTT
TAAGAGTCCTACTCTACTCCTCCAATAACACCTCTGAAACAAGTCTGAAA
CACTCCTTAGATGCCGCCACCTCTGGGTTAGCAGGATGGCTCANCAGGGA
AGGG

Query= MSMg01no539_b06.g1 MSMg01no539_b06.g1 CHROMAT_FILE:
MSMg01no539_b06.g1 PHD_FILE: MSMg01no539_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:53 2005
         (629 letters)



>mm_chr3_52126598_52127626
          Length = 1029

 Score = 1208 bits (625), Expect = 0.0
 Identities = 628/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtttgctaaaaatagacagtacacagtagtaagtgtcactaaaaccagaagtactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aaagtttgctaaaaatagacagtacacagtagtaagtgtcactaaaaccagaagtactgc 770

                                                                       
Query: 61  aaagaaaagatctatttcagagttaaactcaaaggtctgtgttgtaaaatatttggtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aaagaaaagatctatttcagagttaaactcaaaggtctgtgttgtaaaatatttggtctt 710

                                                                       
Query: 121 tgttattctctcaacactcaatttggaaagagaaacatgctccagtttgggtaattaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgttattctctcaacactcaatttggaaagagaaacatgctccagtttgggtaattaacc 650

                                                                       
Query: 181 agtaacataagtcaaataatgaattctgctacctcctaaatacatctgaacagattacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agtaacataagtcaaataatgaattctgctacctcctaaatacatctgaacagattacca 590

                                                                       
Query: 241 agtctttcaaagcaatttcaaagcggcactgcagccttgcaggagctgagagacaggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 589 agtctttcaaagcaatttcaaagcggcactgcagccttgcaggagctgagacacaggaaa 530

                                                                       
Query: 301 tgcatgttgacacgtgcagctcgggcagcttccaggcggctgcatagaggagctcacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgcatgttgacacgtgcagctcgggcagcttccaggcggctgcatagaggagctcacaga 470

                                                                       
Query: 361 ggagctgcagccagtccttggagcaggactagacagcgcccaaaccaaaatgtttaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggagctgcagccagtccttggagcaggactagacagcgcccaaaccaaaatgtttaaggc 410

                                                                       
Query: 421 tgctcagaaacaaagatgtgaggaaggaaatagcagagaggagttacaaaagccttgctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgctcagaaacaaagatgtgaggaaggaaatagcagagaggagttacaaaagccttgctc 350

                                                                       
Query: 481 ttttgtcaagtatgcaattatagaaaaaaaaaaaaagtcttcctggaagtctacatataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttttgtcaagtatgcaattatagaaaaaaaaaaaaagtcttcctggaagtctacatataa 290

                                                                       
Query: 541 gaatgccagccctttccctctctgccgtttaagagtcctactctactcctccaataacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaatgccagccctttccctctctgccgtttaagagtcctactctactcctccaataacac 230

                                        
Query: 601 ctctgaaacaagtctgaaacactccttag 629
           |||||||||||||||||||||||||||||
Sbjct: 229 ctctgaaacaagtctgaaacactccttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)