Query= MSMg01no539_b20.b1 MSMg01no539_b20.b1 CHROMAT_FILE:
MSMg01no539_b20.b1 PHD_FILE: MSMg01no539_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:56 2005
(699 letters)
>mm_chr3_116097648_116098746
Length = 1099
Score = 1230 bits (636), Expect = 0.0
Identities = 682/698 (97%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactgt--gttcccagagtgtgtactgctgctgatcacacgcagggctgaagct 61
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1008 ggaattcactgtgggcccccagagtgtggactgctgctgatcacacgcagggctgaagct 949
Query: 62 ccctggcatatctggaggtttgtcgcttagaggattcttgatcctgtcaacatgaaccat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ccctggcatatctggaggtttgtcgcttagaggattcttgatcctgtcaacatgaaccat 889
Query: 122 cgtattcatgaaagagccttagagatgtgtagatgtgttcccactggatggtgctgttca 181
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 888 cgtattcatgaaagagccttagagatgtgtagatgtgttctcactggatggtgctgttca 829
Query: 182 ttttagggtgcttggattgcatagcatggcaaatgtgtgctttttttttaatttacagaa 241
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 828 ttttagggtgcttggattgcatagcagggcaaatgtgtgc-ttttttttaatttacagaa 770
Query: 242 atggtg-gtttttttttcatatttgaaagaaaacattaaggatttgttttatcagtccaa 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atggtgtttttttttttcatatttgaaagaaaacattaaggatttgttttatcagtccaa 710
Query: 301 tcacagaaaacattagccaaatagcctagaaaatgttttattatccctaatgtttttcac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 709 tcacagaaaacattagccaaatagcctagaaaatgttttattatccctaatgcttttcac 650
Query: 361 tgcacagataggatccactatggagcagggtggctttaaggagggatcctggctgaggcg 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 649 tgcacagataggatccactatggggcagggtggctttaaggagggatcctggctgaggtg 590
Query: 421 aggggggtattagtaaggttgcagtttataagattcttctctgctgttatctactttgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aggggggtattagtaaggttgcagtttataagattcttctctgctgttatctactttgag 530
Query: 481 ttggttttgatcccttgggcaagaactccattccccgtagtctgactttggggacaagtg 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 529 ttggttttgatcccttgggcaagaactccattccccgtagactgactttggggacaagtg 470
Query: 541 gccaagccacacagaaaccgtttctcagctgtagagcttcagagacccaactctgaaaat 600
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 469 gccaagccacacggaaaccgtttctcagctgtagtgcttcagagacccaactctgaaaat 410
Query: 601 taagtccaaaaacatctgcacaggagaaatgtgccaaatgttccccctataaatcatctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taagtccaaaaacatctgcacaggagaaatgtgccaaatgttccccctataaatcatctg 350
Query: 661 taagcttgcaacaaacacaagtttgcttcccttggcag 698
||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taagcttgcaacaaacacaagtttgcttcccttggcag 312
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_b20.g1 MSMg01no539_b20.g1 CHROMAT_FILE:
MSMg01no539_b20.g1 PHD_FILE: MSMg01no539_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:56 2005
(654 letters)
>mm_chr3_115951316_115952369
Length = 1054
Score = 1191 bits (616), Expect = 0.0
Identities = 638/654 (97%), Gaps = 14/654 (2%)
Strand = Plus / Plus
Query: 1 aaacaagaccaactccctattggcaagtagatcttttcaacaactttccttatcagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaagaccaactccctattggcaagtagatcttttcaacaactttccttatcagtgat 260
Query: 61 tcaaagaaagtatctttgcccttcctcttctgcatgacatcctctgctgggtccctctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaagaaagtatctttgcccttcctcttctgcatgacatcctctgctgggtccctctga 320
Query: 121 aaaggaaaatatcccagtgtggaaatcttttctctgtgattctgagacaaagagaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaggaaaatatcccagtgtggaaatcttttctctgtgattctgagacaaagagaaattt 380
Query: 181 acctgacctgaaataccacctgcaaatgtccctgtaccaagcagaattcttctttgttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctgacctgaaataccacctgcaaatgtccctgtaccaagcagaattcttctttgttaa 440
Query: 241 tgctcttcattgtggaaggaagaaaatgtggggttagggcctattctgtcctggaattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcttcattgtggaaggaagaaaatgtggggttagggcctattctgtcctggaattta 500
Query: 301 gcccttgaaatgcatttagaagggaggcagatgttatacagcttaataggcatgcacgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccttgaaatgcatttagaagggaggcagatgttatacagcttaataggcatgcacgga 560
Query: 361 aagaaaaagaagcacaaaagtaaattaggacagcccaggatagcagttaggatatatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaaaaagaagcacaaaagtaaattaggacagcccaggatagcagttaggatatatata 620
Query: 421 tatatatatatatatatatttaaattcctgagtggataatatgtggtttcatttaaataa 480
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatata--------------aattcctgagtggataatatgtggtttcatttaaataa 666
Query: 481 gaacacaatctccattaatttaatttgtcaaagcagtaactccaacacttgcaggcagcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaacacaatctccattaatttaatttgtcaaagcagtaactccaacacttgcaggcagcg 726
Query: 541 cctaggcaggcatttttagatgcttcagtgctactttaaaactaaaaggagacagtcctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cctaggcaggcatttttagatgcttcagtgctactttaaaactaaaaggagacagtcctg 786
Query: 601 tggagttaattactaataaattaatcaaaagtaggcctcccatgtggcgcagtg 654
||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 787 tggagttaattactagtaaattaatcaaaagtaggcctcccatgtggcacagtg 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
