ACTGCGCGGCTAGAGCTAGTCGTGGCGGCCTCTCGAGAACATTGGTGGAG
GAGGCAATCTGTCCTTNCNCTTCCTTTCTTTTTTCTGTTACCCACCCTCT
TAATCTTCACTCGACATGCTTATATGCTGTGCTGTGTTTTTGTTTTTTCT
CCAAAGAACGGCGCGGACAATTTTTCATAGGTATTTCCCGCAGAAACATG
GTCCAATATTCTCCTTTGCTAATTAATATAAAAGCTCAACCCCGCTCAAA
AATATTTGACTCATCAAGGGCCCCAACATCTAGCTAAAGACGATATGTAC
CTTGTCAGCTAAGATCAAAGTGGGGGTTCCTTTGTGTCTCCCTTAGGCTC
TAAAATGTCTCCTCCAGTTTCTGGGTATCACCTCATGTTATTCCGCTCCC
CAGAGTAAGGCATCGCGGTTACTTCCCCCACCTTGGTAAATTTCTCAAGC
TTGTTCCCCTTTACACATTCTATGCTTCTCCCTCGGCACATATAATAGTC
TCATTTGTGTGTGGCAGGGGCTCTTTTTTTCTTCGTCTGTACTACACATT
ACTAGTTCGCCCTCATTAAGCCAATATACCCCTTTTGGTATTTTTTATTT
CCCACTTATCCTTTCACCCGCCCCTTATTAGAAAGTTTCGGTGGTTTTAA
CGACCAACATCTCACCATGTAGNTTNTTCGACCAATAAGACCGCTTATCN
CATTTTATGGTCTCCCCTCTGCGTCCTTCTATTATTAATAAAAGAAGNAA
GGTGCTTATCGCCCATTTATTTACCATCTCTGCCCACTTTTATTATCTCC
CATTCCTCACCTGTCTTAGACGAGCAAGCGATTTTATTTTCTCCCTTTTT
TT

TTACTTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGTGCTACGATGACTCTTTAATGTGTACA
GGAAACCAACTGATGTTAAAATGGAAAAAGTTGAAAGGAGTTAATTTCAG
GGTGTTGCGAGAAACAGCTTATATTTACTTAGTAGGCTTCTTTTGTTTGA
GAAAGGGTCTCGCTGTGTAGTCCTGGCTGGCTTGGGACTCACAGTGATCC
ACTTGCCTCTGCTTTGCAAGTGCTGGCATTACAGGTCCACGACACCGAGC
CTGACAGCAGCCTTCCTTTTGAACACAGGATCCTCTGGAAACTTCCTACT
ATGTGCCTCATCCAGGCAACTGTCATCTCTGTTGTGGATGCTGGAATGAC
TTCCTGGTGAATCATGTTCTTTGATTTCTGTGTTCTCAGTTCTCCCTCCA
CTTTACTAGCCAGAGCCACACCCACTTCAGTCAGGGCTCAATGTCTGTAG
TCTTTCCTCTCCTACTACTCAGTATGGAGTATGTAGCCTCAACCTGGCTA
AAAATTAGCAGCAAGCCGCCTGCCTCAGCTTTCTGAATACTGGATAAATA
GTGAGTACAGCTGAAAGCTTCCAATGTGATTTTTTTTTTGAGATATGATT
TTACTGTGTATCCCTGACTGCCCTGAATCCTACTATGTATCCTCAAGAGA
TCTGCCTACTTCCTTTCTGAGTGCTGGGATTAAAGGTGCAGGCTACTGTG
TGCAAATTGATCATTTTTTTAAAACTGAG

Query= MSMg01no539_d24.g1 MSMg01no539_d24.g1 CHROMAT_FILE:
MSMg01no539_d24.g1 PHD_FILE: MSMg01no539_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:08 2005
         (646 letters)



>mm_chr3_68278013_68279058
          Length = 1046

 Score = 1011 bits (523), Expect = 0.0
 Identities = 600/647 (92%), Gaps = 36/647 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgctacgatgactctttaatgtgtacaggaaaccaactgatgttaaaatggaaaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gtgctacgatgactctttaatgtgtacaggaaaccaactgatgttaaaatggaaaaagtt 908

                                                                       
Query: 61  gaaaggagttaatttcagggtgttgcgagaaacagcttatatttacttagtaggcttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaaaggagttaatttcagggtgttgcgagaaacagcttatatttacttagtaggcttctt 848

                                                                       
Query: 121 ttgtttgagaaagggtctcgctgtgtagtcctggctggcttgggactcacagtgatccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ttgtttgagaaagggtctcgctgtgtagtcctggctggcttgggactcacagtgatccac 788

                                                                       
Query: 181 ttgcctctgctttgcaagtgctggcattacaggtccacgacaccgagcctgacagcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttgcctctgctttgcaagtgctggcattacaggtccacgacaccgagcctgacagcagcc 728

                                                                       
Query: 241 ttccttttgaacacaggatcctctggaaacttcctactatgtgcctcatccaggcaactg 300
           ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 727 ttccttttgaagacaggatcctccggaaacttcctactatgtgcctcatccaggcaacag 668

                                                                       
Query: 301 tcatctctgttgtggatgctggaatgacttcctggtgaatcatgttctttgatttctgtg 360
           |||||||||||||                                |||||||||||||||
Sbjct: 667 tcatctctgttgt--------------------------------tctttgatttctgtg 640

                                                                       
Query: 361 ttctcagttctccctccactttactagccagagccacacccacttcagtcagggctcaat 420
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct: 639 ctctcagttctccctccactttactaaccagagccacacccacttcagtcagggcttatt 580

                                                                       
Query: 421 gtctgtagtctttcctctcctactactcagtatggagtatgtagcctcaacctggctaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 579 gtctgtagtctttcctctcctactactcagtatggagtatgtagcctcagcctggctaaa 520

                                                                       
Query: 481 aattagcagcaagccgcctgcctcagctttctgaatactggataaatagtga-gtacagc 539
           |||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 519 aattggcagcaagcctcctgcctcagctttctgaatactggataaatagtgaag-acagc 461

                                                                       
Query: 540 tgaaagcttccaatgtgattttttttttgagatatgattttactgtgtatccctgactgc 599
           ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 460 tgaaagcttccaacgtgatttttttt--gagatatgattttactgtgtatccctgactgc 403

                                                          
Query: 600 cctgaatcctactatgtatcctcaagagatctgcctacttcctttct 646
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctgaatcctactatgtatcctcaagagatctgcctacttcctttct 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)