Query= MSMg01no539_h05.b1 MSMg01no539_h05.b1 CHROMAT_FILE:
MSMg01no539_h05.b1 PHD_FILE: MSMg01no539_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:24 2005
(624 letters)
>mm_chr3_158697320_158698343
Length = 1024
Score = 1207 bits (624), Expect = 0.0
Identities = 624/624 (100%)
Strand = Plus / Minus
Query: 1 tcaactgtaacactagagggccacttaacccagaagcccagtccttggcagagaggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tcaactgtaacactagagggccacttaacccagaagcccagtccttggcagagaggtgag 765
Query: 61 gaggatggtatggagggaagacgaggtaggggagaaaaaggaaaatctctgaaagtgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaggatggtatggagggaagacgaggtaggggagaaaaaggaaaatctctgaaagtgtag 705
Query: 121 caatgcctctggaaggcaaagcctagacatgtggtgggagtggaagaaatgtggaattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 caatgcctctggaaggcaaagcctagacatgtggtgggagtggaagaaatgtggaattac 645
Query: 181 aaaaagaatccctcccacggatatctaaaaatgatgctcctagcagctttgggtatcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaaaagaatccctcccacggatatctaaaaatgatgctcctagcagctttgggtatcaca 585
Query: 241 gttgtgcaggcagaaaagcatttgattagctccctggcgttatctctggggtgtgggtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gttgtgcaggcagaaaagcatttgattagctccctggcgttatctctggggtgtgggtgt 525
Query: 301 cttggaaatctacatgcacagtattcctttcagataattgagcggtcattgttctctaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cttggaaatctacatgcacagtattcctttcagataattgagcggtcattgttctctaca 465
Query: 361 tgctctctacataaaaccaaaatcagaagcttgaaatgaatgtccctctcaagggtaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgctctctacataaaaccaaaatcagaagcttgaaatgaatgtccctctcaagggtaaga 405
Query: 421 acacagtgagtgctatggcaattttatgcttggtatttaagaacaagattatgagattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acacagtgagtgctatggcaattttatgcttggtatttaagaacaagattatgagattta 345
Query: 481 aggttgaaataaaatttctgaatgttccagaatgaagagcacacccccacccccaatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aggttgaaataaaatttctgaatgttccagaatgaagagcacacccccacccccaatttt 285
Query: 541 tcatttgctgtacagtgcttcttggagacttgcagttagctcttttcatactgcaccttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcatttgctgtacagtgcttcttggagacttgcagttagctcttttcatactgcaccttc 225
Query: 601 caatatgaaggtagatagttcatt 624
||||||||||||||||||||||||
Sbjct: 224 caatatgaaggtagatagttcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_h05.g1 MSMg01no539_h05.g1 CHROMAT_FILE:
MSMg01no539_h05.g1 PHD_FILE: MSMg01no539_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:24 2005
(530 letters)
>mm_chr3_158505939_158506868
Length = 930
Score = 971 bits (502), Expect = 0.0
Identities = 523/530 (98%), Gaps = 1/530 (0%)
Strand = Plus / Plus
Query: 1 ctggtgaccaaggaagaaggatgtgatacctctttggttagaaatgatgactaggctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtgaccaaggaagaaggatgtgatacctctttggttagaaatgatgactaggctatt 260
Query: 61 ttctggtaagagacatttttctctttccctatatggtctttgtcttttgtccttctcttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttctggtaagagacatttttctctttccctatatggtctttgtcttttgtccttgtcttt 320
Query: 121 ttagatactatgtactccagttaggccaaaggcatttccttgctttaccccttggtagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagatactatgtactccagttaggccaaaggcatttccttgctttaccccttggtagaa 380
Query: 181 gcttggttaatttctggttcggttaatgtatggagcaaaccctctgtttttaatctatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttggttaatttctggttcggttaatgtatggagcaaaccctctgtttttaatctatcc 440
Query: 241 ataacattaagtagagtcccttgtgtgcttacagtgtgaagttggaatatcaatcacttt 300
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 ataacattaactagagtcccttgtgtgcttacagtgtgaagttgaaatatcaatcacttt 500
Query: 301 atttcagatcaattttataacttagacttgactagttgcttcataagcttttcatctgag 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 atttcagatcaattttataacttagacttgactagctgcttcataagcttttcatctgag 560
Query: 361 tctttttatttattaatcattttatttgtttgcacttcaaatgatatccccc-ttccttg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 561 tctttttatttattaatcattttatttgtttgcacttcaaatgatatcccccctttcttg 620
Query: 420 ttatcccttcacacctcccatcccattccccatattcccctcccctttgcctctatgagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcccttcacacctcccatcccattccccatattcccctcccctttgcctctatgagg 680
Query: 480 gtgttcctccacccactcacccacaagtgcctcatgaatttagcctcccc 529
||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgttcctccaccaactcacccacaagtgcctcatgaatttagcctcccc 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
