Query= MSMg01no539_h08.b1 MSMg01no539_h08.b1 CHROMAT_FILE:
MSMg01no539_h08.b1 PHD_FILE: MSMg01no539_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:25 2005
(624 letters)
>mm_chr3_128303770_128304794
Length = 1025
Score = 1193 bits (617), Expect = 0.0
Identities = 623/625 (99%), Gaps = 1/625 (0%)
Strand = Plus / Minus
Query: 1 ttgaaggcttacttcacactctcttttgaatatataataaacggatgctaacccgcggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ttgaaggcttacttcacactctcttttgaatatataataaacggatgctaacccgcggtg 766
Query: 61 tactggaacaaaatcattatacaccatatttcagtaggattctggtaactaatcatgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tactggaacaaaatcattatacaccatatttcagtaggattctggtaactaatcatgtta 706
Query: 121 tt-aaagccaaataatttgctacagattctaaaagaaccagtgaattataaagaatgatg 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttaaaagccaaataatttgctacagattctaaaagaaccagtgaattataaagaatgatg 646
Query: 180 aagggtcatggtcacaatggagctggtttgctgtgttggatggatgttgataagaagaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aagggtcatggtcacaatggagctggtttgctgtgttggatggatgttgataagaagaag 586
Query: 240 tgccaatcacatcaggtggcagaaagatgttacatttcccctttcctcttctgtggtctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgccaatcacatcaggtggcagaaagatgttacatttcccctttcctcttctgtggtctc 526
Query: 300 aattcagccatgtccttcatctcctctagatccagcactaactggcaggctgaaccaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 525 aattcagccatgtccttcatctcctctagatccagcactaactggcaggctgagccaaat 466
Query: 360 caatgtaactagcaaagtgtaaaatgctgggccattacagggatgatctttgttctgcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 caatgtaactagcaaagtgtaaaatgctgggccattacagggatgatctttgttctgcct 406
Query: 420 ttgctgacatcgaaatttactgatattgatataataagccattttgtgttttcatttgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttgctgacatcgaaatttactgatattgatataataagccattttgtgttttcatttgta 346
Query: 480 taaaccaaatgtgtggcttagcttattgattttataatcaagatatagtttactcaagtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taaaccaaatgtgtggcttagcttattgattttataatcaagatatagtttactcaagtg 286
Query: 540 tttaaaaatgaacttgtaaacacacatcccctacccattcattaatccaagaaggacctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttaaaaatgaacttgtaaacacacatcccctacccattcattaatccaagaaggacctc 226
Query: 600 ttatgtcatccgccttttgctgagt 624
|||||||||||||||||||||||||
Sbjct: 225 ttatgtcatccgccttttgctgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_h08.g1 MSMg01no539_h08.g1 CHROMAT_FILE:
MSMg01no539_h08.g1 PHD_FILE: MSMg01no539_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:25 2005
(579 letters)
>mm_chr3_128248014_128248992
Length = 979
Score = 1031 bits (533), Expect = 0.0
Identities = 565/585 (96%), Gaps = 16/585 (2%)
Strand = Plus / Plus
Query: 1 aacagtgtgtccaagaatgcttccaaccatttactattcatggtctgcacagtgaagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagtgtgtccaagaatgcttccaaccatttactattcatggtctgcacagtgaagtgt 260
Query: 61 aaccatggcagagggagaggtcacactaaactcatggtggctttcaagtaaaagttcaag 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aaccatggcagagggagaggtcacactacactcatggtggctttcaagtaaaagttcaag 320
Query: 121 tattttactgaagagaggtctttttcctcttaggatggaacacaggtctttgggaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttactgaagagaggtctttttcctcttaggatggaacacaggtctttgggaatttt 380
Query: 181 gcacaatgtattttgacaatattcactccttcccccaattcctgccagatccactcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacaatgtattttgacaatattcactccttcccccaattcctgccagatccactcttct 440
Query: 241 tctctacccactcaactttgtgtctttttgtttgtttgtttgtttgtttgtttgtttttt 300
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tctctacccactcaactttgtgtcttttt----------ttgtttgtttgtttgtttttt 490
Query: 301 gcactgacaaagtccaact------gcctgatgcattcatggatgtgtggccttctacta 354
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 491 gcactgacaaagtccaacttgtgctgcctgatgcattcatggatgtgtggccttctacta 550
Query: 355 gtatataatcaacctaccatgggcctgtcctcttagggaacacccactatctctttccca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtatataatcaacctaccatgggcctgtcctcttagggaacacccactatctctttccca 610
Query: 415 gtggctatcaatggataatagcttctcagatggaattccacgcctcccctctgaatgctg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtggctatcaatggataatagcttctcagatggaattccacgcctcccctctgaatgctg 670
Query: 475 gtagacggtctaggttttaattaagagatgtgagtcacatcccttcttctaaaggctcag 534
|||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 671 gtagacagtctaggttttaattaagacatgtgagtcacaccccttcttctaaaggctcag 730
Query: 535 ggatcattgctaaagaggggttggaaagacagtaagagccagagg 579
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggatcattgctaaagaggggttggaaagacagtaagagccagagg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
