Query= MSMg01no539_i17.b1 MSMg01no539_i17.b1 CHROMAT_FILE:
MSMg01no539_i17.b1 PHD_FILE: MSMg01no539_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:32 2005
(532 letters)
>mm_chr3_148229774_148230705
Length = 932
Score = 978 bits (506), Expect = 0.0
Identities = 527/540 (97%), Gaps = 10/540 (1%)
Strand = Plus / Plus
Query: 1 cagaagcgggcagagagagtgagcccctcccattctgaatgtcaaagtactcagctagaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 191 cagaagcgggcagagagagtgagcccctcccattctgaatgtcaaagcactcagctagaa 250
Query: 61 gagacagaaagcctgtctctccgagagaggacgtatagttcttcaa----------aaaa 110
||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 251 gagacagaaggcctgtctctccgagagaggacgtatagttcttcaacaacaacaaaaaaa 310
Query: 111 aaatagccaagttcttttattttaagtttttcctggatgtgtaatttgagaagttccctc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaatagccaagttcttttattttaagtttttcctggatgtgtaatttgagaagttccctc 370
Query: 171 aacttgtgagcctgtgtgtcaggccgtggtggagtcctgcagactgggaaggttggagag 230
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aacttgtgagcctgtctgtcaggccgtggtggagtcctgcagactgggaaggttggagag 430
Query: 231 aggtgagatgggagaatggcattctgtatcatctccattcaacattcctgcattatgtat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aggtgagatgggagaatggcattctgtatcatctccattcaacattcctgcattatgtat 490
Query: 291 gtgccagttgcctaccacacgtttatcatatagattatccctgtaccttgtagacaatga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtgccagttgcctaccacacgtttatcatatagattatccctgtaccttgtagacaatga 550
Query: 351 aggaaaccagacagaatttctttagtgtctcacgctggagatgaaaggaaatttgtaatc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aggaaaccagacagaatttctttagtgtctcacgctggagatgaaaggaaatttgtaatc 610
Query: 411 atttaagaaaggtaactgtgccttaaaagtagcttaggtaacgttaaacctgggaggcca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atttaagaaaggtaactgtgccttaaaagtagcttaggtaacgttaaacctgggaggcca 670
Query: 471 gtgtgttctgaggctggcctttacagaagagcgagccacattgatttcagtgacttgatt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtgtgttctgaggctggcctttacagaagagcgagccacattgatttcagtgacttgatt 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_i17.g1 MSMg01no539_i17.g1 CHROMAT_FILE:
MSMg01no539_i17.g1 PHD_FILE: MSMg01no539_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:32 2005
(521 letters)
>mm_chr3_148411677_148412598
Length = 922
Score = 839 bits (434), Expect = 0.0
Identities = 450/456 (98%), Gaps = 3/456 (0%)
Strand = Plus / Minus
Query: 59 agtgacctcactgcttgcttgtgaaggggcagcccaaggtatctggaggtagagaaccat 118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 920 agtgacctcactgcttgcttgtgaaggggcagcccaaggtatctggaagtagagaacaat 861
Query: 119 gattttaaattaattatttgct--agagactataggagcagaaggggaagaaaaacaatt 176
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 860 gattttaaattaattatttgctagagagactataggagcagaaggggaagaaaaacaatt 801
Query: 177 ctaacaatgccaaatatgtgagcctcagggaagccagaagtttgaaagccagacaggctg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctaacaatgccaaatatgtgagcctcagggaagccagaagtttgaaagccagacaggctg 741
Query: 237 acacaggcctacaatcccaatataacactaaggatgttaaggcaggaggattagagttca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 acacaggcctacaatcccaatataacactaaggatgttaaggcaggaggattatagttca 681
Query: 297 aagccagcctgagctatgtagtgagaaactccaagcacccc-aaaaaagatttgggccct 355
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 aagccagcctgagctatgtagtgagaaactccaagcaccccaaaaaaagatttgggccct 621
Query: 356 acttcgaaatttgcttcccatagactcattaccacttctaactctcacgtctaagccact 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acttcgaaatttgcttcccatagactcattaccacttctaactctcacgtctaagccact 561
Query: 416 tgggtgtggaaggcatcctgtctctgactctgtctgtctgtctgtctgtctgtctgtctg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgggtgtggaaggcatcctgtctctgactctgtctgtctgtctgtctgtctgtctgtctg 501
Query: 476 tctgtctcttcctgtgtgtgtgtgtgtgtgtgtgtg 511
||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgtctcttcctgtgtgtgtgtgtgtgtgtgtgtg 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space: 466032
Effective search space used: 466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
