Query= MSMg01no539_i18.b1 MSMg01no539_i18.b1 CHROMAT_FILE:
MSMg01no539_i18.b1 PHD_FILE: MSMg01no539_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:32 2005
(644 letters)
>mm_chr3_46896695_46897740
Length = 1046
Score = 1187 bits (614), Expect = 0.0
Identities = 636/644 (98%), Gaps = 3/644 (0%)
Strand = Plus / Plus
Query: 4 ggaatt-aatatgtataacagactcacaaagatcctactgtctcttccatatgaatgcta 62
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaatatgtagaacagactcacaaagatcctactgtctcttccatatgaatgcta 262
Query: 63 ggattaaaggtatgtgttatcatcactttactgtagcaaggttattagcaagtccaattc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggattaaaggtatgtgttatcatcactttactgtagcaaggttattagcaagtccaattc 322
Query: 123 atgtgaatgcagttacccaatttacagaaaaaaaa--gagtattctagcattcaaaacag 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 323 atgtgaatgcagttacccaatttacagaaaaaaaaaagagtattctagcattcaaaacag 382
Query: 181 actttactttaaaaatcaactgagaaatgagaaagatacttttagttttaaatttttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 actttactttaaaaatcaactgagaaatgagaaagatacttttagttttaaatttttaaa 442
Query: 241 gttaaagaaagtctgtcatcattaaggcagaaatactaacttaaccttaagtttccaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttaaagaaagtctgtcatcattaaggcagaaatactaacttaaccttaagtttccaaag 502
Query: 301 atttactttgtccatctcttatattttggaaatttgctaggaattatagtaataaatgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atttactttgtccatctcttatattttggaaatttgctaggaattatagtaataaatgcc 562
Query: 361 ttaagctataacaaaagtataaagatttcaaggaaaattgtgtgtaatttcttcctttac 420
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 563 ttaagctataacaaaagtataaagatttcaaggacaattgtgtgtgatttcttcctttac 622
Query: 421 atggaaaatactctttattccgcataatgctatgtgttcctagcaaaaataccctatctt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 623 atggaaaatactctttattccgcataatgctatgtgttcctagcaaaaataccctatcct 682
Query: 481 tcaagagttcttttagtttatattagctttcagaaatatacattttaatattttactttt 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 683 tcaagagttcttttagtttatattagctttcagaaatatacactttaatattttactttt 742
Query: 541 taaatcacagggttttcattctaacatactatacatctgttttcgtttatttagttaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 taaatcacagggttttcattctaacatactatacatctgttttcgtttatttagttaatt 802
Query: 601 gtctatttataaaataagaaatttgtgacttatgtttctatata 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtctatttataaaataagaaatttgtgacttatgtttctatata 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space: 656824
Effective search space used: 656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_i18.g1 MSMg01no539_i18.g1 CHROMAT_FILE:
MSMg01no539_i18.g1 PHD_FILE: MSMg01no539_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:32 2005
(677 letters)
>mm_chr3_47016127_47017202
Length = 1076
Score = 1218 bits (630), Expect = 0.0
Identities = 666/678 (98%), Gaps = 3/678 (0%)
Strand = Plus / Minus
Query: 1 tatgaaatgcactgcttatttcctgacaacacagatgggatttgctctgaagaaaaattt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 827 tatgaaatgcactgcttatttcctgacgacacagatgggatttgctctgaagaaaaattt 768
Query: 61 ctaaacaggtccacttcccttgtatcctaataatctagctctagtgggtggtggactaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctaaacaggtccacttcccttgtatcctaataatctagctctagtgggtggtggactaga 708
Query: 121 agggcaccatttaagcaccattattaaagttaaggttaagaacattttgagcctacagtt 180
||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 707 agggctccatttaagcaccattattaaagttaaggttaagaaaattttgaggctacagtt 648
Query: 181 ttctgataagaatagcatagacatgaccaaataaaggatttttaatatactctatgaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 647 ttctgataagaatagcatagacatgaccaaataaaggatttttaatatactatatgaatc 588
Query: 241 aacaaaattatttagaaaatatttgtaatattttctattcgtcctgtaataacacaacac 300
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 587 aacaaaattatttagaaaatatttgtaatattttctatttgtcctgt-ataacacaacac 529
Query: 301 aattagagtggagtgaggaatagaaatttgttatcttaactctgaaagtaagaaatataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aattagagtggagtgaggaatagaaatttgttatcttaactctgaaagtaagaaatataa 469
Query: 361 gattcagacaggttggtttttgcatagaccagtgcagtaagagg-gtagcattagctctg 419
|||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct: 468 gattcagacaggttggtttttgcagagaccagtgcagtaag-ggagtagcattagctctg 410
Query: 420 ttacctgaattctctgcatgtacttttgaatccttcactttgccttctccccatgtctgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 409 ttacctgaattctctgcatgtacttttgaatccttcactttgccttctccccatgtcagt 350
Query: 480 cactctgtttttccttgtctgataagaacatcagccatgttgaattagaactaattctaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cactctgtttttccttgtctgataagaacatcagccatgttgaattagaactaattctaa 290
Query: 540 ttacctcattttaacttgattctctctgtaaacactttattacctaataaagacaaatgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttacctcattttaacttgattctctctgtaaacactttattacctaataaagacaaatgt 230
Query: 600 ggagataatgaaggattaatcctaaatacaaaccttacttaagtacataactaactagta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ggagataatgaaggattaatcctaaatacaaaccttacttaagtacataactaactagta 170
Query: 660 tactgaatatatgatata 677
|||| |||||||||||||
Sbjct: 169 tacttaatatatgatata 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1076
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1066
Effective search space: 711022
Effective search space used: 711022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
