NNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACAGTTTCACTAATTGACCCAAACAAGACTTTTGTTAGGCTG
CTTTGAGAAGGTTTCTAGCATTCACCTTGATGTGCAAACTTAACCAATGC
CCAGCAGCAGCCAGGATACAACTCAGTTTACTCCCTGCAAATCAGTTGAC
AGCATCATCATTCTCTGATCTATAATCTCATCTCTGGGTCTTTCTGTTAC
CTACTTAAGTTCAGCTCTCCTAGCCTGAATTCTCTATATAGCGTGAAATA
GCCTTTACATAATCCTAGACATGTGTACTCTGGCTGCTCATTATCATTAC
TGCAGTAATCTCTTCTTCCATTTTAATAATTCTTTTTCCATTCTTCTTTA
TTTAGATTATAATTACATCATTTTCTTCTCCCTCCCTTTCTTCCTATGCC
TTTTATATTACCTCCTTTCCAACCCTGCTACCTCTCAATTTCACAGCCTC
TTATTCTTTAACCATTGTTGCTATATATACATGTAAACATTGCATATATA
AATGCACTCTGACGAATCCATTCAGTATTGCCTACATCTTTGTTTCTGTC
GCCATCCTTGGGGAAGACCACTTCTTCCTCTCTCAGTTACAAATTGTCTA
TTGATCTGCATCTAAAGTTTAGGGCCCCCCAAATTTCTCTTTATCTAAAT
CTAGNAGNCTTGTCTGGTTATTTTGTTGTCACTTGCTGTGNATAAACACA
ACTGAACAAATGCTATGTATAAA

GATGACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTTTTCAGTAACA
CTCAAATTTACTTCTAGTAGAGACAGTGAAAATGATCAGGCATTACAATT
TACTTGAATAGAGCTAGAAAGCTTAGGGATAGTCTACATAGTATTTACTT
AGAACAATAGCCGAGTCACACCCAAACACAGGAATACACAATGGCCTAGG
AAATAGGTGAGTTGTAGTATTATTCATGAAAGGTTAGTCGAAAGGAATTC
CCCTGGTGCAAGTTTTTCACTAGGCCCAGAGGAATAGCATAATCAGGTAT
TTACTAAAGGACCCCTGGTGGTGGGTTTAACAATAGACTAGCATTGTATC
AGAGCATTTACCTGGCTCCCGTGTTTAGCTGATCTTAATTAAGGGTTGTT
CCTATTCTCAGTTATAAACAAGGCCTGGCTCCTGCCATCTTTTTATGCAT
GCATTTTCTTTGTTTTGTGTTAAGAACCAGTATACCTTAACAGATGTATT
CTCCTGGCCTTCTTGGNTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNCC
CGGAATAAAAGCCGGGTGTTTGCTTGGAGAAAAAACTTCAGGAGACGGCC
CTCCCCGGTGGTCATACTGGTTTGGCATTCATTTTTCCCCTGACTTCTGG
GTCCCCGGGAAACAAAACCCTGTTTCCTGCTGATCGAGGACCCCACTGGA
AGTGTTCTGTCCGCATTAATGTTTTCTTTTTTTGAT

Query= MSMg01no539_i19.b1 MSMg01no539_i19.b1 CHROMAT_FILE:
MSMg01no539_i19.b1 PHD_FILE: MSMg01no539_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:32 2005
         (589 letters)



>mm_chr3_10887330_10888318
          Length = 989

 Score =  994 bits (514), Expect = 0.0
 Identities = 535/542 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagtttcactaattgacccaaacaagacttttgttaggctgctttgagaaggt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 542 gaattcacagttccactaattgacccaaacaagacttttgttaggctgctttgaggaggt 483

                                                                       
Query: 65  ttctagcattcaccttgatgtgcaaacttaaccaatgcccagcagcagccaggatacaac 124
           ||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttctagccttcaccttaatatgcaaacttaaccaatgcccagcagcagccaggatacaac 423

                                                                       
Query: 125 tcagtttactccctgcaaatcagttgacagcatcatcattctctgatctataatctcatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcagtttactccctgcaaatcagttgacagcatcatcattctctgatctataatctcatc 363

                                                                       
Query: 185 tctgggtctttctgttacctacttaagttcagctctcctagcctgaattctctatatagc 244
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 362 tctgggtctttctgttacctccttaagttcagctctcctagccttaattctctatatagc 303

                                                                       
Query: 245 gtgaaatagcctttacataatcctagacatgtgtactctggctgctcattatcattactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgaaatagcctttacataatcctagacatgtgtactctggctgctcattatcattactg 243

                                                                       
Query: 305 cagtaatctcttcttccattttaataattctttttccattcttctttatttagattataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagtaatctcttcttccattttaataattctttttccattcttctttatttagattataa 183

                                                                       
Query: 365 ttacatcattttcttctccctccctttcttcctatgccttttatattacctcctttccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttacatcattttcttctccctccctttcttcctatgccttttatattacctcctttccaa 123

                                                                       
Query: 425 ccctgctacctctcaatttcacagcctcttattctttaaccattgttgctatatatacat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccctgctacctctcaatttcacagcctcttattctttaaccattgttgctatatatacat 63

                                                                       
Query: 485 gtaaacattgcatatataaatgcactctgacgaatccattcagtattgcctacatctttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gtaaacattgcatatataaatgcactctgacgaatccattcagtattgcctacatctttg 3

             
Query: 545 tt 546
           ||
Sbjct: 2   tt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)