Query= MSMg01no539_n13.b1 MSMg01no539_n13.b1 CHROMAT_FILE:
MSMg01no539_n13.b1 PHD_FILE: MSMg01no539_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:56 2005
(582 letters)
>mm_chr3_119532420_119533401
Length = 982
Score = 930 bits (481), Expect = 0.0
Identities = 544/585 (92%), Gaps = 35/585 (5%)
Strand = Plus / Minus
Query: 5 gaattccctcattgagat-acatacttgctccactcagaatccctgccctgagacagttg 63
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattccctcaatgagataacatacttgctccactcagaatccctgccctgagacagttg 529
Query: 64 atgccctctagggatacagg----aaaaaaaaaaaaaaggttttggtttggtttggtttt 119
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 528 atgccctctagggatacaggaaaaaaaaaaaaaaaaaaggttttggtttggtttggtttt 469
Query: 120 ggg------------------gtttttttatttttatgattagaactgaaaggcaggaaa 161
||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 468 gggttttttttttttttttttttttttttttttttatgattagaactgaaaggcaggaaa 409
Query: 162 gaaacattaactgtcatctcagagagttcaggcagggccaatatgatatgtaccatatga 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaaacattaactgtcatctcagagagttcaggcagggccaatatgatatgtaccatatga 349
Query: 222 tactgagaaaattaagtttcttgaaatctatccatca--------tctatctatctatct 273
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 348 tactgagaaaattaagtttcttgaaatctatccatcatctatctgtctatctatctatct 289
Query: 274 atctatctatctatctatct----atgatagtttttatatgctcatcccaaggagtggca 329
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 288 atctatctatctatctatctataaatgatagtttttatatgctcatcccaaggagtggca 229
Query: 330 ggattagaaggtgtggccctgttggagtaggggtgtcactgtgggtgtaggatataagtc 389
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 228 ggattagaaggtgtggccctgttggagtaggtgtgtcactgtgggtgtaggatataagtc 169
Query: 390 atcctatctgcctggaagccagtattctgctagcagccttcagacaaagatgcaaaactt 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atcctatctgcctggaagccagtattctgctagcagccttcagacaaagatgcaaaactc 109
Query: 450 tcagctcctcctgcaccatgcctatctggatgctgccatgctcccaccttgatgataatg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tcagctcctcctgcaccatgcctatctggatgctgccatgctcccaccttgatgataatg 49
Query: 510 tactgaacttctgaacttgtcaaccagccccaataaaatgttgtc 554
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 48 tactgaacctctgaacttgtcaaccagccccaataaaatgttgtc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_n13.g1 MSMg01no539_n13.g1 CHROMAT_FILE:
MSMg01no539_n13.g1 PHD_FILE: MSMg01no539_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:56 2005
(647 letters)
>mm_chr3_119394340_119395386
Length = 1047
Score = 1220 bits (631), Expect = 0.0
Identities = 643/647 (99%)
Strand = Plus / Plus
Query: 1 tcataatggacatccttgtttttccagccacctaagtggtactgagttccatgtactgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataatggacatccttgtttttccagccacctaagtggtactgagttccatgtactgag 260
Query: 61 ttgtgaaaaggattggctttctactgatcaagtctgcaatttctttgcaatgggaagtat 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgaaaaggattgtctttctactgatcaagtctgcaatttctttgcaatgggaagtat 320
Query: 121 ccttcctcctcagtactttcaaaatggcaacacttattatgaaaatagataggtagaaat 180
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 321 ccttcctcctcagcactttcaaaatggcaacacttcttatgaaaatagataggtggaaat 380
Query: 181 gtattttttttctagatggaaatatattatagtttctctgaaattgcatccattaatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattttttttctagatggaaatatattatagtttctctgaaattgcatccattaatcaa 440
Query: 241 attaaatctatttatgagaaaaatgtagcttctaaatggacaaatgatttattcaaggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaatctatttatgagaaaaatgtagcttctaaatggacaaatgatttattcaaggtc 500
Query: 301 agatttaaatcaatcagagtcatgagtggctcactctcccagaatttttatgtgttctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatttaaatcaatcagagtcatgagtggctcactctcccagaatttttatgtgttctct 560
Query: 361 tatatagtgtcttaattgtaaagaatttcttgcagcagagtaaaaattttccagatgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatagtgtcttaattgtaaagaatttcttgcagcagagtaaaaattttccagatgaaa 620
Query: 421 aatataattgaaccgaatatatgtataaatctggggttatcaaacctccaggttctaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatataattgaaccgaatatatgtataaatctggggttatcaaacctccaggttctaaat 680
Query: 481 gtgggctttaccacaaaaataattattttatttttattctaatacttcaggattccatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgggctttaccacaaaaataattattttatttttattctaatacttcaggattccatta 740
Query: 541 agcattttaaacgatcacttgtttttaattgggaagaaaaagaaaattaggtctaatgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcattttaaacgatcacttgtttttaattgggaagaaaaagaaaattaggtctaatgaa 800
Query: 601 gttagttgggaaataaatgcactatgactatgttgacattctttcaa 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttagttgggaaataaatgcactatgactatgttgacattctttcaa 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
