Query= MSMg01no540_d15.b1 MSMg01no540_d15.b1 CHROMAT_FILE:
MSMg01no540_d15.b1 PHD_FILE: MSMg01no540_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:26 2005
(595 letters)
>mm_chr3_75975262_75976256
Length = 995
Score = 1062 bits (549), Expect = 0.0
Identities = 585/597 (97%), Gaps = 4/597 (0%)
Strand = Plus / Plus
Query: 1 gatatttcactgtgattttttttaagtgtgtgtgtgtgcacacgtgcgcgtttgtttttg 60
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gatatttcactgtgattttttt-aagtgtgtgtgtgcgcacacgtgcgcgtttgtttttg 259
Query: 61 tatgtgtacttcaatgtatggatgacaatactgtgatcctgagttatccaccactacttt 120
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 260 tatgtgtacttcaatgtatggatgacaatactgtaatcctgagttatccactactacttt 319
Query: 121 gtctgtcatgctttacactaaagaaaataccaata-aaactctctgagaagtttgcttaa 179
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 320 gtgtgtcatgctttacactaaagaaaataacaatagaaactctctgagaagtttgcttaa 379
Query: 180 gatatgttaacaatgatccgcaaaacagaatattgatggcatatttaatatatgcctata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatatgttaacaatgatccgcaaaacagaatattgatggcatatttaatatatgcctata 439
Query: 240 caaatttccccaaataccagtgcatctcatgttttctacagacacttagtatacaatgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaatttccccaaataccagtgcatctcatgttttctacagacacttagtatacaatgtt 499
Query: 300 ggagaattatttagctttaattggtagt-agagatcctctgtttgtacttctttgtccat 358
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 500 ggagaattatttagctttaattggtggtca-agatcctctgtttgtacttctttgtccat 558
Query: 359 tacatgtaactgaggttttatcttaatcctcatatggaaagtatccgcatcattacacct 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 tacatgtaactgaggttttatcttaatcctcatatggaaagtatccgtatcattacacct 618
Query: 419 aattgcaaatttgttatcactcttattgactataattcagtttcccctgtctatagacag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aattgcaaatttgttatcactcttattgactataattcagtttcccctgtctatagacag 678
Query: 479 tttcagaatattataatccaattaatcactaaatgcacttttacagagcttaattttatt 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 679 tttcagaatattataatccaattaatcactaaatgcacttttacagagcttaatttcatt 738
Query: 539 aattgaggtagatttttatatccttaattaaggaagctaccattaccatattacatt 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aattgaggtagatttttatatccttaattaaggaagctaccattaccatattacatt 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_d15.g1 MSMg01no540_d15.g1 CHROMAT_FILE:
MSMg01no540_d15.g1 PHD_FILE: MSMg01no540_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:26 2005
(165 letters)
>mm_chr3_76126039_76126603
Length = 565
Score = 300 bits (155), Expect = 3e-86
Identities = 161/163 (98%)
Strand = Plus / Minus
Query: 1 tattcatgtaaatttccatacactactgaattttgggtttgttaaagttatttttttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tattcatgtaaatttccatacactactgaattttgggtttgttaaagttatttttttctt 304
Query: 61 atgcttttttcagatgcttacagagataaactgatactatgttcaaattttaatggcagt 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 303 ctgcttttttcagatgcttacagagataaaatgatactatgttcaaattttaatggcagt 244
Query: 121 aatagagaagaggacaggtagaggactatgacactgtaggcct 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatagagaagaggacaggtagaggactatgacactgtaggcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space: 87449
Effective search space used: 87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
