NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTCTTTCCTTCATAAGAGAGTATCCCAAGTCGACGCATTGC
AAACAGACAATTTACATAGGATTCCTCTCCACTGTAAATTCATTCATGGT
ATTACAAGCAATTGCAAATTGCAAATGTTTTGCACACTGTTTGAACAAAT
ACTGTTTTGTCCTCTCTGAACCCCTTGATAGTGTTCATGGGAACCACATA
CTTATAAGAAATTACCACAGTGTTTGTAAACATAAGGTTTCTCTCCACTG
TGAATCTATTCACAGTATTGAATTTAAGAGTTTACCTTGAAAGTTTTACC
ACATTGCTAACATGGAAAAAGCATTTCTCAGGTGTAAAAATGAACTGGAA
CAGACAGTCTTTACTGAGTAAACTACAAGAAAAGCTGGATTCTCACTGGA
TGTTTCCATATCTCTCTAAATGACTAAAAGCCTTTTCCAAGATTCTTATA
AAGACATTCTGTCTAGAACATTTTTTCATGGACTTTAAGATAACTATGTC
TTATTTTATTGAAGTTTTTCTGATTGTATACAGCCTGAACTAGGATGAGA
ACATGTATTTCACATGGCTTTACTCTATGGGTATTTTGCTTGGTAAGGTA
TTTGTATTCTAGAAATCACATATATTTTTCTCCACATTATATTCTCTATG
TTGTCAGACTCTTAATACTGTCCAACTTCTTACAATTCTTCTGGTGTTT

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAACACGGAGTTAATTATTGTATAGCTT
GAAGGAAGAGAAGTTCCTACTTGTTCCGATATATAATATATGGATTGTAT
CATGGAATTCTCCTTATTCATTTTCTAGTCTCAGAAATTCAGAATTAACA
TTTCAGTTCAGGAAATAAGTTAAAATTTCCAAAAACAAATTCCATTTGTC
TACTGTCCCTGAATTCATTATTTTGTATCTTTTTTAAGAACAGTTATTTT
TCAGATTATAATTAGCACTATTTGTATTAGTACACGTGGTTAACTTGGGG
ATGTTTTAGCAATATTTTTTCTCTTGACTTGACGTAAATATGCTTTTCAT
TTTTAGGTGGCCATAGCCATGGTGAAGGGCTGTATCTCCTCTCCTTAGCA
TGAGTGCTTACATTTCAAGATTTGTTATGCTGTTGAATATTACTGAACGT
TTGAGTCTTCTCTACTTCTGTGCCTATGCTTAACTTGTGTCACTGGCCAT
GGATAACAAGCAAATTAGAATGTTGGCATCCTAGGTCCTTGACAGGGAAG
GTTCTGTGTCAAGAATTTTCTACGCTATTAATATTGTCAAGTAGCTGTTT
TCTGACATCCTTAAATACACAAATACATTTACTATGATTTGAAGAAATAC
CACTCAACCCATCAGAGGGAAAACCAATCTGCTGGTTAACAGAAGTTTTC
AG

Query= MSMg01no540_e15.b1 MSMg01no540_e15.b1 CHROMAT_FILE:
MSMg01no540_e15.b1 PHD_FILE: MSMg01no540_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:31 2005
         (504 letters)



>mm_chr3_44976174_44977077
          Length = 904

 Score =  944 bits (488), Expect = 0.0
 Identities = 500/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatcccaagtcgacgcattgcaaacagacaatttacataggattcctctccactgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatcccaagtcgacgcattgcaaacagacaatttacataggattcctctccactgtaaa 260

                                                                       
Query: 61  ttcattcatggtattacaagcaattgcaaattgcaaatgttttgcacactgtttgaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattcatggtattacaagcaattgcaaattgcaaatgttttgcacactgtttgaacaa 320

                                                                       
Query: 121 atactgttttgtcctctctgaaccccttgatagtgttcatgggaaccacatacttataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactgttttgtcctctctgaaccccttgatagtgttcatgggaaccacatacttataag 380

                                                                       
Query: 181 aaattaccacagtgtttgtaaacataaggtttctctccactgtgaatctattcacagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattaccacagtgtttgtaaacataaggtttctctccactgtgaatctattcacagtat 440

                                                                       
Query: 241 tgaatttaagagtttaccttgaaagttttaccacattgctaacatggaaaaagcatttct 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaggcaagagtttaccttgaaagttttaccacattgctaacatggaaaaagcatttct 500

                                                                       
Query: 301 caggtgtaaaaatgaactggaacagacagtctttactgagtaaactacaagaaaagctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtgtaaaaatgaactggaacagacagtctttactgagtaaactacaagaaaagctgg 560

                                                                       
Query: 361 attctcactggatgtttccatatctctctaaatgactaaaagccttttccaagattctta 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 attctcactggatgtttccatatctctctaaatgtctaaaagccttttccaagattctta 620

                                                                       
Query: 421 taaagacattctgtctagaacattttttcatggactttaagataactatgtcttatttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagacattctgtctagaacattttttcatggactttaagataactatgtcttatttta 680

                                   
Query: 481 ttgaagtttttctgattgtataca 504
           ||||||||||||||||||||||||
Sbjct: 681 ttgaagtttttctgattgtataca 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no540_e15.g1 MSMg01no540_e15.g1 CHROMAT_FILE:
MSMg01no540_e15.g1 PHD_FILE: MSMg01no540_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:31 2005
         (666 letters)



>mm_chr3_45139660_45140725
          Length = 1066

 Score = 1210 bits (626), Expect = 0.0
 Identities = 656/666 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacacggagttaattattgtatagcttgaaggaagagaagttcctacttgttccgata 60
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 866 aaaacacagagttaattattgtatagcttgaaggaagagaagttcctacttgttccaata 807

                                                                       
Query: 61  tataatatatggattgtatcatggaattctccttattcattttctagtctcagaaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tataatatatggattgtatcatggaattctccttattcattttctagtctcagaaattca 747

                                                                       
Query: 121 gaattaacatttcagttcaggaaataagttaaaatttccaaaaacaaattccatttgtct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 746 gaattaacatttcagttcaggaaataagttaaaatttccaaaaacaaattccatttctct 687

                                                                       
Query: 181 actgtccctgaattcattattttgtatcttttttaagaacagttatttttcagattataa 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actgtctctgaattcattattttgtatcttttttaagaacagttatttttcagattataa 627

                                                                       
Query: 241 ttagcactatttgtattagtacacgtggttaacttggggatgttttagcaatattttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttagcactatttgtattagtacacgtggttaacttggggatgttttagcaatattttttc 567

                                                                       
Query: 301 tcttgacttgacgtaaatatgcttttcatttttaggtggccatagccatggtgaagggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcttgacttgacgtaaatatgcttttcatttttaggtggccatagccatggtgaagggct 507

                                                                       
Query: 361 gtatctcctctccttagcatgagtgcttacatttcaagatttgttatgctgttgaatatt 420
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 506 gtatcccctctccttagcatgagtgcttacattccaagatttgttatgctgttgaatatt 447

                                                                       
Query: 421 actgaacgtttgagtcttctctacttctgtgcctatgcttaacttgtgtcactggccatg 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actgaacgtttgagacttctctacttctgtgcctatgcttaacttgtgtcactggccatg 387

                                                                       
Query: 481 gataacaagcaaattagaatgttggcatcctaggtccttgacagggaaggttctgtgtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 386 gataacaagcaaattagaatgttggcatcctaggtccttgacagggaagcttctgtgtca 327

                                                                       
Query: 541 agaattttctacgctattaatattgtcaagtagctgttttctgacatccttaaatacaca 600
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaattttctactctattaatattgtcaagtagctgttttctgacatccttaaatacaca 267

                                                                       
Query: 601 aatacatttactatgatttgaagaaataccactcaacccatcagagggaaaaccaatctg 660
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatacatttactatggtttgaagaaataccactcaacccatcagagggaaaaccaatctg 207

                 
Query: 661 ctggtt 666
           ||||||
Sbjct: 206 ctggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)