Query= MSMg01no540_f13.b1 MSMg01no540_f13.b1 CHROMAT_FILE:
MSMg01no540_f13.b1 PHD_FILE: MSMg01no540_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:35 2005
(598 letters)
>mm_chr3_58456821_58457818
Length = 998
Score = 1091 bits (564), Expect = 0.0
Identities = 588/600 (98%), Gaps = 9/600 (1%)
Strand = Plus / Plus
Query: 1 tgtcccctcatacttggaattgtgggtattttacactgtttggaagaaagctaagcctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcccctcatacttggaattgtgggtattttacactgtttggaagaaagctaagcctta 260
Query: 61 aagatgagtatgccctgaatgacatgtgctgtgagcctccttcctgaccgccatatgctg 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 261 aagatgagtatgccctgaatgacgtgtgctgtgagcctccttcctgaccgccatatgccg 320
Query: 121 tatgtgccatcaaatgtgtcaggcaactgctcatgaattccttcaagtggttttcacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgtgccatcaaatgtgtcaggcaactgctcatgaattccttcaagtggttttcacttt 380
Query: 181 taattattatttttaatttaaaaagcccccctgtactggctagttttgtgtcgacttgac 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattattatttttaattttaaaagcccccctgtactggctagttttgtgtcgacttgac 440
Query: 241 acagctggagttatcacagacaaaggagcttcagttgaggaaatgcctccatgagatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagctggagttatcacagacaaaggagcttcagttgaggaaatgcctccatgagatcca 500
Query: 301 actgtaaggcattttctcaattagtgaccaagggggaaaggcccattgtgggtagtgcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgtaaggcattttctcaattagtgaccaagggggaaaggcccattgtgggtagtgcca 560
Query: 361 tctctaggctggtagtcttggctctataagagagcaggctgagcaagccagtaaagaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctaggctggtagtcttggctctataagagagcaggctgagcaagccagtaaagaata 620
Query: 421 tccctccatggcctctgcatcagctcctgctttctgacctgcttgagttccagtcctgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctccatggcctctgcatcagctcctgctttctgacctgcttgagttccagtcctgac 680
Query: 481 ttcctt-gaacagcagt-atgaacagcagtatggaagtgtaagctgaataaatcctttcc 538
|||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcctttg-------gtgatgaacagcagtatggaagtgtaagctgaataaatcctttcc 733
Query: 539 tctccgacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagacac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctccgacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagacac 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_f13.g1 MSMg01no540_f13.g1 CHROMAT_FILE:
MSMg01no540_f13.g1 PHD_FILE: MSMg01no540_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:35 2005
(484 letters)
>mm_chr3_58610386_58611269
Length = 884
Score = 793 bits (410), Expect = 0.0
Identities = 431/438 (98%)
Strand = Plus / Minus
Query: 1 aacctttgcaacaaaccccaggggtaaaaaatgtaatatttgatgaaagttgaagacaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 609 aacctttgcaacaaaccccaggggtaaaaaatgtaatatttgatgaaagttggagacaaa 550
Query: 61 actataactaaagaagctagtgggcagaactgtctttgtgcaccggttcaggcacagtca 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 549 actataactaaagaagctagtgggcagaactgtctttgtgcaccggttcatgcacagtca 490
Query: 121 gaacagcttcctcgagtgtctggctccttctgagtccagtggggtaactagagaagacaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaacagcttcctcgcgtgtctggctccttctgagtccagtggggtaactagagaagacaa 430
Query: 181 acccaccagaggcagggccggggaacacagctcagtgtagaccaagggtcttgctaggga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 429 acccaccagaggcagggccggggaacacagctcagtgtacaccaagggtcttgctaggga 370
Query: 241 acagactatgcatcttagctatgattaggagggaatcaataaatactactagaagaaaga 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 369 acagactatgcatcttagctatgattagaagggaatcaataaatactactagaagaaaga 310
Query: 301 caagctatggagaagacagagaatgaaggaggagggctttcctgagacctaaatccctga 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 309 caagctatgtagaagacagagaatgaaggaggagggctttcctgagacctaaaaccctga 250
Query: 361 agtcacaccagcacatatgccatctatctgcagtgctgttaagcaaagatctctctctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agtcacaccagcacatatgccatctatctgcagtgctgttaagcaaagatctctctctct 190
Query: 421 ctctctctctctctctct 438
||||||||||||||||||
Sbjct: 189 ctctctctctctctctct 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
